CX298097

Overview
NameCX298097
Unique NameCX298097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig738 contig Ccv1_Contig738:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 316
            +L ERVRQELK+ELKQGFKSRIEDVREEI+RKRRAGKLPGDTT+VLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKSKRK
Sbjct:  186 SLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKSKRK 290          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 316
            +L ERVRQELK+ELKQGFKSRIEDVREEI+RKRRAGKLPGDTT+VLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKSKRK
Sbjct:  189 SLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKSKRK 293          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.678e-51
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 319
            +L ERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT++LK WWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NSQ+ T LKSKRKR
Sbjct:  210 SLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQTST-LKSKRKR 314          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.064e-47
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 319
            +L ERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  + T LKSKRKR
Sbjct:  322 SLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 427          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.164e-46
Identity = 87/105 (82.86%), Postives = 95/105 (90.48%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 316
            +L ERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T LK+KRK
Sbjct:  314 SLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKNKRK 418          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 5.779e-46
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 316
            +L ERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK+WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T  K+KR+
Sbjct:  278 SLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVSKNKRR 382          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.548e-46
Identity = 84/105 (80.00%), Postives = 95/105 (90.48%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 316
            +L ERVRQELK ELKQG+K ++ D+REEILRKRRAGKLPGDTTS LK WWQ H+KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S TS+K+KRK
Sbjct:  262 SLMERVRQELKHELKQGYKEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRK 366          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOX1_MAIZE (Homeobox protein knotted-1-like 1 (Fragment) OS=Zea mays GN=KNOX1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.681e-45
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 2
Query:   17 VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 280
            VRQELK+ELKQGFKSRIEDVREEILRKRRAGKLPGDTTS+LK WWQ+HSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+N
Sbjct:    1 VRQELKLELKQGFKSRIEDVREEILRKRRAGKLPGDTTSILKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 319
            +L ERVRQELK ELKQG++ ++ D+REEILRKRRAGKLPGDT S LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S +S KSKRKR
Sbjct:  206 SLVERVRQELKHELKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPASSSSDKSKRKR 311          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.090e-44
Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    2 ALTERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR*R 325
            +L ERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  + +S KS+ +  R
Sbjct:  319 SLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSSSQKSQTQECR 426          
The following BLAST results are available for this feature:
BLAST of CX298097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
KNAT7_ARATH1.855e-5291.43Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
HD1_BRANA1.855e-5291.43Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]
KNOS3_ORYSJ2.678e-5191.51Homeobox protein knotted-1-like 3 OS=Oryza sativa ... [more]
KNAP3_MALDO3.064e-4783.02Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT3_ARATH1.164e-4682.86Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNAT4_ARATH5.779e-4680.95Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNOSD_ORYSJ7.548e-4680.00Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNOX1_MAIZE1.681e-4594.32Homeobox protein knotted-1-like 1 (Fragment) OS=Ze... [more]
KNOSB_ORYSJ3.746e-4579.25Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
LET12_SOLLC1.090e-4477.78Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionC06008E10SK RindPdig24 Citrus clementina cDNA clone C06008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298097 ID=CX298097; Name=CX298097; organism=Citrus clementina; type=EST; length=677bp
GGCTCTTACGGAAAGAGTTAGACAGGAGTTGAAGATTGAACTGAAGCAGG
GTTTTAAATCAAGAATTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGA
AGGGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTG
GCAGCAGCACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGC
TAGTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATC
AACCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTT
AAAGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATATATCTTGACGA
TGAATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAAT
ACACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACAT
ATCGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCC
TTGGTAGCTACTATAGAATGTAATTGGTGAGATGGGATTTACATAGCTTA
CTTATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAA
CAGGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCATGAT
TGTAAATGTACATGATTGATCTTTGCT
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