CX298116

Overview
NameCX298116
Unique NameCX298116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14452 contig Ccv1_Contig14452:228..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COAD_ARATH (Phosphopantetheine adenylyltransferase OS=Arabidopsis thaliana GN=COAD PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.764e-68
Identity = 130/166 (78.31%), Postives = 147/166 (88.55%), Query Frame = 3
Query:   48 NSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVXXXXXXXXXXXXTLRKLEAEKA-KNEQPA 542
            +S +SP NS+GAVVLGGTFDRLHDGHR+FLKA+AELARDRIVVGVCDGPMLT KQF+++IQP++ERMRNVE Y+KSIKPELVVQ EPITDPYGPSIVDENLEAIVVSKETLPGGLSVN+KRA+RGLSQLKIEVV++V            TLRK+EAEKA K +QPA
Sbjct:    6 DSKMSPANSFGAVVLGGTFDRLHDGHRMFLKAAAELARDRIVVGVCDGPMLTKKQFSDMIQPIEERMRNVETYVKSIKPELVVQAEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNRKRAERGLSQLKIEVVEIVSDGSSGNKISSSTLRKMEAEKASKQKQPA 171          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COASY_MOUSE (Bifunctional coenzyme A synthase OS=Mus musculus GN=Coasy PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25
Identity = 59/153 (38.56%), Postives = 90/153 (58.82%), Query Frame = 3
Query:    3 PRVLMKMAILDES-VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            P  L+   I   S V  S   P   Y    +GGTFDRLH+ H++ L  +  LA++++VVGV D  +L +K   EL+QP  ER+ ++  ++  IKP L  +  P+ DPYGP+  D  LE +VVS+ET  GG++VN+ R + G  +L +  + L+
Sbjct:  165 PNALLPSTIRPASPVARSPRQPVRGYHRGAVGGTFDRLHNAHKVLLSVACVLAQEQLVVGVADKDLLKSKLLPELLQPYAERVEHLTEFLVDIKPSLTFELVPLLDPYGPAGSDPTLEFLVVSEETYRGGMAVNRFRLENGKEELALYQIQLL 317          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: YG5T_YEAST (Uncharacterized protein YGR277C OS=Saccharomyces cerevisiae GN=YGR277C PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 3
Query:   69 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            N +    LGGTFD +HDGH++ L  S  +   R++ G+    +L NK++ ELI+P D R R+V  +IK +KP+L V+  P+ D  GP+     +E +VVS+ET+ G  +VNK R ++G+S L + VV+++
Sbjct:  140 NKFHVTALGGTFDHIHDGHKILLSVSTFITSQRLICGITCDELLQNKKYKELIEPYDTRCRHVHQFIKLLKPDLSVELVPLRDVCGPTGKVPEIECLVVSRETVSGAETVNKTRIEKGMSPLAVHVVNVL 269          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COASY_PIG (Bifunctional coenzyme A synthase OS=Sus scrofa GN=COASY PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 55/139 (39.57%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   42 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            V  S   P   +    +GGTFDRLH+ H++ L  +  LA++++VVGV D  +L +K   EL+QP  ER+ ++  ++  IKP L     P+ DPYGP+  D +LE +VVS+ET  GG++VN+ R + GL +L +  + L+
Sbjct:  179 VARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRFRLENGLEELTLYQIQLL 317          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COASY_HUMAN (Bifunctional coenzyme A synthase OS=Homo sapiens GN=COASY PE=1 SV=4)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 54/139 (38.85%), Postives = 85/139 (61.15%), Query Frame = 3
Query:   42 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            V  S   P   Y    +GGTFDRLH+ H++ L  +  LA++++VVGV D  +L +K   EL+QP  ER+ ++  ++  IKP L     P+ DPYGP+  D +LE +VVS+ET  GG+++N+ R +  L +L +  + L+
Sbjct:  180 VAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLL 318          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COAD_PYRAE (Phosphopantetheine adenylyltransferase OS=Pyrobaculum aerophilum GN=coaD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 59/149 (39.60%), Postives = 81/149 (54.36%), Query Frame = 3
Query:   84 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVC-DGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVXXXXXXXXXXXXTLRKLEAEKAK 527
            VVLGGTFD LH GH + L A+A L  DRI++G+  D    T KQ+   ++P   R+ N+   +  I PE  V    I DPYGP++ D  LEAIV S ET P  L +N +RA RGL  +++ ++  V              R LE  ++K
Sbjct:    8 VVLGGTFDTLHSGH-VKLLATATLIGDRILIGLTSDSFASTYKQYK--VRPFSVRLANLRNLMSLIAPEREVAYVEIHDPYGPAVFDPRLEAIVASIETAPRALQINDERAKRGLRPMEVFIISTVRDGYGHTLSSTYIRRVLERPESK 153          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: YDA8_SCHPO (Uncharacterized protein C1F12.08 OS=Schizosaccharomyces pombe GN=SPAC1F12.08 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 3
Query:   90 LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            +GGTFD LH GH++ L  +A      ++VGV    +L  K   E ++ + +R   V  ++ SIK ++  +   I DP+GP+I D  +++++VS+ET  G  +V ++R  RGL +L I  +DL+
Sbjct:  161 VGGTFDHLHVGHKVLLTLTAWFGVKEVIVGVSGDELLKKKVQKEFLENIQKRKEEVSNFLHSIKEDINCRVVTIHDPFGPTITDAEIDSLIVSEETKTGATAVQEERVKRGLPELSIYCIDLL 283          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COAD_METKA (Phosphopantetheine adenylyltransferase OS=Methanopyrus kandleri GN=coaD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 3
Query:   57 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            ++P   +  VV+GGTFDRLH GH+  L  + EL  DR+V+GV     +  ++  + ++P +ER+R V  +++       V+  P+ D YG ++ D+ ++AIVVS ET P  L +N+ R  RG   L I V+  V
Sbjct:    1 MTPLARFRKVVVGGTFDRLHLGHQRLLSVALELG-DRVVIGVTTDSFV-REEGKKGVEPFEERVRAVRRFVEEKGASDRVEIVPLEDRYGTTLEDDEMDAIVVSPETEPVALEINELRRKRGFPPLSIVVIPFV 132          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COAD_METTH (Phosphopantetheine adenylyltransferase OS=Methanobacterium thermoautotrophicum GN=coaD PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 3
Query:   75 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            Y  V +GGTFDR H GHR  L  +  +  + +++GV        K   E I+P   RM+N+E Y++    +  V    + DPYG ++ DE  EAIVVS+ET P    +N  R +RG  +L I  +D+V
Sbjct:    5 YSLVAVGGTFDRFHKGHRRLLDEAFRVG-ETVMIGVTSDEFAAAK--GEGIEPCSVRMKNLEEYLRDKDADYHVMR--LDDPYGTTVTDEAFEAIVVSRETEPVAREINAIRRNRGFRELDIITIDMV 127          
BLAST of CX298116 vs. ExPASy Swiss-Prot
Match: COAD_THEGJ (Phosphopantetheine adenylyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=coaD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:   75 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLV 458
            Y  VV+GGTFDRLH GH+  L+ + E+ R  + VG+    M+ NK +AE I P + R+ ++  + + +      +   I    G +   ++LEAIVVS+ET  G L VN+ R +RGL  L+I  + LV
Sbjct:    5 YRKVVVGGTFDRLHLGHKALLRKAFEVGR-YVYVGLTSDEMIRNKPYAEKILPYELRLMDLLKFFE-VNGYTNYRIIKINTAIGFADRIKSLEAIVVSEETYKGALLVNRAREERGLKPLEIVTIKLV 130          
The following BLAST results are available for this feature:
BLAST of CX298116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COAD_ARATH1.764e-6878.31Phosphopantetheine adenylyltransferase OS=Arabidop... [more]
COASY_MOUSE9.164e-2538.56Bifunctional coenzyme A synthase OS=Mus musculus G... [more]
YG5T_YEAST1.197e-2440.00Uncharacterized protein YGR277C OS=Saccharomyces c... [more]
COASY_PIG3.482e-2439.57Bifunctional coenzyme A synthase OS=Sus scrofa GN=... [more]
COASY_HUMAN4.548e-2438.85Bifunctional coenzyme A synthase OS=Homo sapiens G... [more]
COAD_PYRAE1.282e-1839.60Phosphopantetheine adenylyltransferase OS=Pyrobacu... [more]
YDA8_SCHPO4.870e-1834.96Uncharacterized protein C1F12.08 OS=Schizosaccharo... [more]
COAD_METKA1.200e-1636.57Phosphopantetheine adenylyltransferase OS=Methanop... [more]
COAD_METTH5.954e-1637.50Phosphopantetheine adenylyltransferase OS=Methanob... [more]
COAD_THEGJ4.267e-1438.28Phosphopantetheine adenylyltransferase OS=Thermoco... [more]

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Properties
Property NameValue
Genbank descriptionC06008G05SK RindPdig24 Citrus clementina cDNA clone C06008G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298116 ID=CX298116; Name=CX298116; organism=Citrus clementina; type=EST; length=662bp
GGCCGAGGGTTTTAATGAAAATGGCGATTTTGGATGAATCAGTGGTCAAT
TCCAACATTTCACCCGACAATTCTTACGGAGCTGTCGTCCTCGGTGGTAC
CTTTGACCGATTACACGACGGCCACCGCCTTTTTCTCAAGGCTTCGGCTG
AACTTGCGAGGGATCGAATTGTGGTCGGAGTTTGTGACGGACCTATGTTG
ACCAACAAACAGTTTGCAGAGTTAATTCAACCTGTCGACGAAAGGATGCG
TAATGTTGAAGCTTACATCAAGTCTATTAAGCCAGAGCTTGTAGTGCAAA
CTGAACCGATTACAGACCCATATGGCCCTTCAATTGTTGATGAAAATTTA
GAAGCTATTGTTGTCAGCAAGGAAACATTACCTGGTGGCCTTTCAGTCAA
TAAGAAGAGAGCTGACAGAGGCCTATCCCAGCTGAAGATTGAAGTTGTGG
ATCTAGTTTCCGAAGGATCTAGTGGAGATAAGTTAAGTTCATCGACATTA
AGAAAACTTGAGGCAGAGAAGGCCAAAAATGAGCAGCCTGCATGAAACTA
CTTTCTGGAGATTTAGTTGAGCTCCTGAGGTTGAGATGGCCCGGTTGGAA
CTGCATAAGGATGTGGATTTTTTTGGGAGCATAAACAAATTTTGCAAAAA
CTCGTCACTGTA
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