CX298117

Overview
NameCX298117
Unique NameCX298117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298117_ssr559 microsatellite CX298117_ssr559:559..568. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_PENDI (Polygalacturonase OS=Penicillium digitatum GN=PG1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.997e-33
Identity = 68/83 (81.93%), Postives = 69/83 (83.13%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            +AKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWA              NVPAGASC
Sbjct:  285 IAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAGNSLSGGKKSGKCGNVPAGASC 367          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR1_PENOL (Polygalacturonase 1 OS=Penicillium olsonii GN=PG1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            +AKYGIVIEQDYENGSPTGKPT GVPI+ LT+E VTG++KSS T+VYILCG+GSC +W W+              NVP+GASC
Sbjct:  288 IAKYGIVIEQDYENGSPTGKPTTGVPITGLTVEKVTGSVKSSGTDVYILCGSGSCSDWTWSGNKVSGGKTSSKCKNVPSGASC 370          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_ASPPA (Polygalacturonase OS=Aspergillus parasiticus GN=pecA PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            + KYG+V+EQDYENGSPTG PTNG+ +S +T E VTGT++S AT++YILCG+GSC +W W+              NVP GASC
Sbjct:  281 ITKYGLVVEQDYENGSPTGTPTNGITVSGITFEKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVPTGASC 363          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLRA_ASPFL (Polygalacturonase A OS=Aspergillus flavus GN=pecA PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            + KYG+++EQDYENGSPTG PTNG+ +S++T + VTGT++S AT++YILCG+GSC +W W+              NVP GASC
Sbjct:  281 ITKYGLIVEQDYENGSPTGTPTNGIKVSDITFDKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVPTGASC 363          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPNG (Polygalacturonase-1 OS=Aspergillus niger GN=pgaA PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            +  YGIVIEQDYENGSPTG P+ G+PI+++T++ VTGTL+  AT+VYILCG+GSC +W W+              NVP+GASC
Sbjct:  286 ITDYGIVIEQDYENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGGKTSDKCENVPSGASC 368          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_COCCA (Polygalacturonase OS=Cochliobolus carbonum GN=PGN1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            +AKYGIVIEQDY NG PTGKPT GVPI+ +T++NV G++  S TE+Y+LCG GSC  W W+              NVP+GASC
Sbjct:  282 IAKYGIVIEQDYLNGGPTGKPTTGVPITGVTLKNVAGSVTGSGTEIYVLCGKGSCSGWNWSGVSITGGKKSSSCLNVPSGASC 364          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_ASPOR (Polygalacturonase OS=Aspergillus oryzae GN=AO090023000161 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            + KYG+++EQDYENGSPTG PTNG+ +S++T + VTGT++S AT++YILCG+GSC +W W+              NV  GASC
Sbjct:  281 ITKYGLIVEQDYENGSPTGTPTNGIKVSDITFDKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVSTGASC 363          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_PENJA (Polygalacturonase OS=Penicillium janthinellum PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            +  YGIVIEQDYENGSPTG PT+GVPI++LT++ +TG+++S A EVYILCG+ +C +W W+              NVP+GASC
Sbjct:  289 ITDYGIVIEQDYENGSPTGTPTSGVPITDLTVKGITGSVESDAVEVYILCGDDACSDWTWSGVDITSGQTSSKCENVPSGASC 371          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_PENGR (Polygalacturonase OS=Penicillium griseoroseum GN=PGG1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            +AKYGIVIEQDYENGSPTG PT+GVPI++LT++NV GT+ SS  + YILC +G+C +W W+               +P+GASC
Sbjct:  294 IAKYGIVIEQDYENGSPTGTPTSGVPITDLTLDNVHGTVASSGVDTYILCASGACSDWSWSGVSITGGQTSKKCKGIPSGASC 376          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR2_PENOL (Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            + KYGIVIEQDYENGSPTG PT+GVPI++LT++ V GT+ SS T VYILC  G+C +W W               NVP+ ASC
Sbjct:  298 ITKYGIVIEQDYENGSPTGTPTDGVPITDLTLDGVKGTVASSGTNVYILCAEGACSDWTWDGVSVSGGKTSSACENVPSSASC 380          
The following BLAST results are available for this feature:
BLAST of CX298117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PGLR_PENDI1.997e-3381.93Polygalacturonase OS=Penicillium digitatum GN=PG1 ... [more]
PGLR1_PENOL5.268e-2663.86Polygalacturonase 1 OS=Penicillium olsonii GN=PG1 ... [more]
PGLR_ASPPA1.874e-2355.42Polygalacturonase OS=Aspergillus parasiticus GN=pe... [more]
PGLRA_ASPFL1.874e-2353.01Polygalacturonase A OS=Aspergillus flavus GN=pecA ... [more]
PGLR1_ASPNG3.196e-2355.42Polygalacturonase-1 OS=Aspergillus niger GN=pgaA P... [more]
PGLR_COCCA1.214e-2255.42Polygalacturonase OS=Cochliobolus carbonum GN=PGN1... [more]
PGLR_ASPOR1.586e-2251.81Polygalacturonase OS=Aspergillus oryzae GN=AO09002... [more]
PGLR_PENJA2.705e-2254.22Polygalacturonase OS=Penicillium janthinellum PE=3... [more]
PGLR_PENGR2.705e-2254.22Polygalacturonase OS=Penicillium griseoroseum GN=P... [more]
PGLR2_PENOL1.343e-2155.42Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 ... [more]

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Properties
Property NameValue
Genbank descriptionC06008G06SK RindPdig24 Citrus clementina cDNA clone C06008G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298117 ID=CX298117; Name=CX298117; organism=Citrus clementina; type=EST; length=689bp
GAGGCTAGTCTCGATTTTTTTTTTTTTTTTTTGATATTAATAAGCAAAAC
AACTATTGGGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCC
TTCATTCTACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTA
ATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACA
GTGGTGACATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAA
GAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGA
GATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATCCT
CGTGCCGAATTCGGCACGAGGTCGCCAAGTACGGTATCGTCATCGAGCAG
GATTACGAGAACGGCAGCCCTACCGGCAAGCCCACCAACGGTGTCCCCAT
CTCTGAGCTCACCATTGAGAACGTTACCGGTACCCTCAAGAGCAGCGCTA
CTGAAGTTTACATTCTCTGCGGTAACGGTAGCTGCAAGAACTGGAAATGG
GCTGGAAACTCTCTCTCTGGTGGTAAGAAGAGTGGCAAGTGCGGTAACGT
GCCTGCCGGTGCTTCTTGCTAGATTGCCAGCGATCAAATGGTGAAACACC
AACAGCATGACATCGACCAGACAGAGACTGGGTTATCTT
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