CX298118 | Citrus Genome Database

Overview


Name	CX298118
Unique Name	CX298118
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	533

Libraries


Library Name	Type
RindPdig24	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9336	contig	Ccv1_Contig9336:624..1155.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX298118 vs. ExPASy Swiss-Prot

BLAST of CX298118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_WHEAT	1.316e-32	100.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	1.316e-32	100.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	1.316e-32	100.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	1.316e-32	100.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	1.316e-32	100.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	1.316e-32	100.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	1.316e-32	100.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	1.316e-32	100.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	1.316e-32	100.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	1.316e-32	100.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

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Properties


Property Name	Value
Genbank description	C06008G07SK RindPdig24 Citrus clementina cDNA clone C06008G07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX298118 ID=CX298118; Name=CX298118; organism=Citrus clementina; type=EST; length=533bp
GAGGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCT
GGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAATCAACTC
TTCATCTGGTTTTGCGTCTGAGGGGTGGCATGCAGATTTTTGTTAAGACA
TTGACCGGGAAGACGATTACCCTGGAGGTAGAGAGTTCTGATACCATTGA
CAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGC
AGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGGCGTACTCTGGCT
GATTACAACATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTCCG
AGGTGGTGGTTTCTGAGGGGGATTCACTGCGCCCCGTGTCAATGTCTTTT
CTGTTCAAGATGGTCCTTATGTTGTCTTTGTCTTCTTGAAGAAGACTAGT
TATAATTGATAATATGGTCTTTTGTTTTTATATGTTGTTGTTTGTTGAAC
GAGTTATGCTTTTGAATAAAAAACTCTAGTTTA