CX298122

Overview
NameCX298122
Unique NameCX298122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298122_ssr575 microsatellite CX298122_ssr575:575..586. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:98..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 5.500e-45
Identity = 86/152 (56.58%), Postives = 108/152 (71.05%), Query Frame = 2
Query:   77 KFAEFKGLKVRPXXXXXXXXXXXXXXXXXXXXAQIVCEAQET---AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            +F EF+GLK                        +I CEAQ+T   AVEVP ++D+ WQ+ VL+S  PVLVEFWAPWCGPCRMIHPI+D+L+K + GK K YK+NTDESP+ A RYGIRS+PTV+IFK GEKKD++IGAVP+ TL  +IE+FL
Sbjct:   40 RFLEFRGLKSSRSLVTQSASLGANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.769e-43
Identity = 75/115 (65.22%), Postives = 99/115 (86.09%), Query Frame = 2
Query:  179 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            I+CEAQ+TA  +P V D+TW+SLVL +  PV+V+FWAPWCGPC+MI PI++EL++QY GK+K +K+NTD+SP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TL TSI+KFL
Sbjct:   62 IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.147e-42
Identity = 75/115 (65.22%), Postives = 97/115 (84.35%), Query Frame = 2
Query:  179 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            ++  A+E   EV  V D++W  LV+ S +PVLV+FWAPWCGPCRMI PIIDEL+K+Y GK+KCYK+NTDESP+ AT+YGIRSIPTV+ FKNGE+KD+VIGAVPK+TL+  +EK++
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.358e-42
Identity = 72/115 (62.61%), Postives = 97/115 (84.35%), Query Frame = 2
Query:  179 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            +VCEAQET  ++  V D+TW SLVL +  PV+V+FWAPWCGPC+MI P++++L++ Y GK+K YK+NTDESP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TLT+S++KFL
Sbjct:   71 VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.358e-42
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 2
Query:  179 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            ++CEAQ+TA  +P V D+TW SLVL +  PV V+FWAPWCGPC+MI PI++EL+++Y G+ K YK+NTDESP+   +YG+RSIPT+MIF NGEKKDT+IGAV K TL TSI KFL
Sbjct:   65 VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.268e-41
Identity = 75/117 (64.10%), Postives = 95/117 (81.20%), Query Frame = 2
Query:  173 AQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            ++  C+      EV    +  W S+VL S +PVLVEFWAPWCGPCRMI P+IDEL+K+YVGK+KC KVNTD+SP+IAT YGIRSIPTV++FKNGEKK++VIGAVPK+TL T I+K++
Sbjct:   54 SRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 73/117 (62.39%), Postives = 97/117 (82.91%), Query Frame = 2
Query:  173 AQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            + +VC+A E   EV  V D++W+  VL+S  PV+V+FWAPWCGPC++I P+IDEL+K+Y GK+  YK+NTDE+P IAT+Y IRSIPTV+ FKNGE+K+++IGAVPKSTLT SIEK+L
Sbjct:   63 SSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 2
Query:  182 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            VC+++    EV    +  W  LV+   +PVLVEFWAPWCGPCRMI P+IDEL+K Y GK+ C KVNTD+SP++A+ YGIRSIPTV+IFK GEKK++VIGAVPKSTLTT I+K++
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.509e-39
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = 2
Query:  173 AQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            ++ VC+ +    EV    +  W ++V+   SPVLVEFWAPWCGPCRMI P+IDEL+K YVGK+KC KVNTD+ P+IA+ YGIRSIPTV++FK+GEKK++VIGAVPK+TL T I+K++
Sbjct:   57 SRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of CX298122 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.040e-35
Identity = 63/105 (60.00%), Postives = 89/105 (84.76%), Query Frame = 2
Query:  209 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 523
            E  AV D T++++VL+S  PVLV+FWAPWCGPCR+I P++DE++ +Y  KLKC K+NTDESP++A+ YGIRSIPT+M+FK G+K +T+IGAVPK+T+  ++EK+L
Sbjct:   35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
The following BLAST results are available for this feature:
BLAST of CX298122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TRXM4_ARATH5.500e-4556.58Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA1.769e-4365.22Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM_PEA1.147e-4265.22Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM2_ARATH4.358e-4262.61Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM1_ARATH4.358e-4264.35Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_ORYSJ1.268e-4164.10Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_SPIOL2.824e-4162.39Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_MAIZE1.550e-3963.16Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_WHEAT4.509e-3960.68Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM_CHLRE1.040e-3560.00Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

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Properties
Property NameValue
Genbank descriptionC06008G11SK RindPdig24 Citrus clementina cDNA clone C06008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298122 ID=CX298122; Name=CX298122; organism=Citrus clementina; type=EST; length=626bp
CGCTTCGGCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTT
CCATTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTT
AAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGAGTTCGAGTTC
GAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAA
CTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTT
CTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGG
GCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATG
TGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATT
GCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAA
TGGCGAGAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGA
CCACCAGCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACACGTTT
GCTAGAAACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACT
ATGCCTTGGGTTAAGATACTTTGCTT
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