CX298127

Overview
NameCX298127
Unique NameCX298127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9901 contig Ccv1_Contig9901:26..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.120e-24
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   78 MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 362
            MA +GG R+V    N+ EI +LARFAV+EHNKKQN+ L+F            GTLY ITLEA +GGQKK++EAKVWEKPW+ FKEL+EF  V  +
Sbjct:    1 MAALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDA 95          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT6_ARATH (Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.120e-24
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:   78 MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA 377
            MA VGGV +V A  N+ E+ +LARFAVDEHNKK+N+ L+F            GTL+ +TLE +E GQKKL+EAKVW KPW+ FKEL+EF P + + + T+
Sbjct:   34 MALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITS 133          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   66 TQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF 344
            T+KTM  +GGV ++    N+ EI +LARFA+ EHNK+QN  L+F            GT+Y +TLEA EG Q K FEAKVW KPWM FK+L+EF
Sbjct:   29 TEKTMM-LGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEF 120          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   87 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 362
            +GGV  V    N+  +V+LARFAV EHNKK NS L+F            GTLY  T+E  EG  KKL+EAKVWEKPWM FKEL+EF PV  S
Sbjct:   47 LGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 137          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT12_ORYSJ (Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3
Query:   51 FIIRLTQKTMA--TVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSST 374
            F++      MA   +GG  +  + AN+ E   LARFAVDEHNK++N+ L+F            GTL+ +TLEA+E G+KK++EAKVW KPW+ FKEL+EF     + + T
Sbjct:   34 FLVGSASLAMAGHVLGGAHDAPSAANSVETDALARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPWLDFKELQEFRNTGDATTFT 143          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 3
Query:   90 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSS 371
            GG+++V A  N+ ++  LARFAV+EHN+K N+ L F            GT+Y +T+E  +G  KKL+EAKVWEKPW  FK+L+EF PV +  S+
Sbjct:   42 GGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKPVEEGASA 135          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYTA_HELAN (Cysteine proteinase inhibitor A OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 45/75 (60.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  129 EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPV 353
            EI  LARFAVDEHNKKQN+ L+F            G +Y ITLEA  GG KK +EAKVW KPW  FKEL+EF PV
Sbjct:    3 EIDELARFAVDEHNKKQNALLEFGKVVNTKEQVVAGKMYYITLEATNGGVKKTYEAKVWVKPWENFKELQEFKPV 77          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   69 QKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFN 347
            Q+    VGGVR+++A AN+ ++ +LARFAVDEHNK +N  L++            GT++ +T+E  +G   K++EAKV EK W   K+L+ FN
Sbjct:    4 QQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFN 96          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT1_HORVU (Cysteine proteinase inhibitor OS=Hordeum vulgare GN=ICY PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   87 VGGVREVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVA 356
            +GGV++  A   N  E + LARFAV EHN K N+ L+F            G ++  T+E  EGG KKL+EAKVWEK W  FK+L+EF P A
Sbjct:   17 LGGVQDAPAGRENDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKKLYEAKVWEKAWENFKQLQEFKPAA 107          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT7_ARATH (Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  126 QEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 362
            +EI ++A FAV EHN+++N+ L+             G LY +TLE +E G+KK++EAKVW KPWM FK+L+EF  +  S
Sbjct:   59 KEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEFKNIIPS 137          
The following BLAST results are available for this feature:
BLAST of CX298127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYTI_VIGUN8.120e-2456.84Cysteine proteinase inhibitor OS=Vigna unguiculata... [more]
CYT6_ARATH8.120e-2453.00Cysteine proteinase inhibitor 6 OS=Arabidopsis tha... [more]
CYT3_ARATH4.170e-2052.69Cysteine proteinase inhibitor 3 OS=Arabidopsis tha... [more]
CYT1_ORYSJ7.114e-2055.43Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT12_ORYSJ2.070e-1943.64Cysteine proteinase inhibitor 12 OS=Oryza sativa s... [more]
CYT1_MAIZE6.022e-1946.81Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1[more]
CYTA_HELAN8.696e-1860.00Cysteine proteinase inhibitor A OS=Helianthus annu... [more]
CYT1_ARATH2.797e-1641.94Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]
CYT1_HORVU4.772e-1647.25Cysteine proteinase inhibitor OS=Hordeum vulgare G... [more]
CYT7_ARATH8.999e-1545.57Cysteine proteinase inhibitor 7 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC06008H04SK RindPdig24 Citrus clementina cDNA clone C06008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298127 ID=CX298127; Name=CX298127; organism=Citrus clementina; type=EST; length=679bp
AGGCCATAAGGAAAGTAGAAAACACAACAACTTAAAATCTTTCTCATCGC
TTTATCATCAGACTTACGCAGAAAACAATGGCTACAGTAGGCGGTGTTCG
TGAGGTTGAAGCAACAGCCAACAATCAGGAGATCGTTAATCTCGCACGCT
TCGCTGTGGATGAGCATAACAAGAAGCAGAATTCAAATCTGCAATTTGTA
AAAGTTGTAAGTGCGAAGCAGCAAGTGGTTTCAGGGACTCTGTACGACAT
CACCTTGGAGGCTGTTGAAGGAGGTCAGAAGAAACTTTTTGAAGCTAAGG
TCTGGGAGAAGCCTTGGATGCAATTCAAGGAGTTGAAAGAATTCAATCCT
GTTGCTCAGTCTCACTCCTCAACCGCTTAGCTTGTGGTGACTGAAGATGA
CATCTACGTGTAGCTTGCAATGGATCAAACAAAGAGACAGTATCAATAAG
AATGGAGCTATAACCATGTTCAGAATATAAAAATAAATGTAACCGGATTT
ATGAGTTTGGTTCTTTAATCTTTTGCAAGTTATGTGTCGATTATTTATGG
TAGTAGCTGCAACTCAGCGCAACTTTTATAACTGTGTGAAAAATAATTGA
AATGACCTTTGGTCTGTAATATATATACAAGATTAATCTCTTTCTACTTA
AAAAAAAAAAAAAAAACTCGAGGGGGGGG
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