CX298129

Overview
NameCX298129
Unique NameCX298129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10373 contig Ccv1_Contig10373:180..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_THEEB (Protein grpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  188 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP 607
            +E +++  EA    +D  +    A      ++   LE    +LS+ +    ++ +R++ADF+NFRKRT++E+  L    +  V+  LL V+D+FE A+T I+ +TE EEKI+ SYQ +YKQLVE L  +GV  ++  G P
Sbjct:   48 VENVENPAEATPGEEDQASEATSANAADLLEQIAALEAAKASLSQVVEERNSQYIRLAADFENFRKRTQREKEELELQIKCSVIADLLPVVDSFELARTHIQTETEAEEKIHRSYQGVYKQLVECLKRIGVSAMQAKGKP 187          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_SYNY3 (Protein grpE OS=Synechocystis sp. (strain PCC 6803) GN=grpE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.307e-19
Identity = 46/118 (38.98%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  254 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP 607
            E ++   + +     +++   SE+L + + R + ++A+FDNFRKRT++E+       +G  +  LL V+DNFERA+TQIK  ++GE +I+ SYQ +YK LV+ L  LGV P+   G P
Sbjct:   69 EEIIAILQKDLASHRQELAEQSEQLDSIKKRYVALAAEFDNFRKRTQREKEEQAKLIKGRTITELLPVVDNFERARTQIKPNSDGENQIHKSYQGVYKNLVDSLKGLGVAPMRPEGKP 186          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_SYNPW (Protein grpE OS=Synechococcus sp. (strain WH7803) GN=grpE PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.912e-19
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  188 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            +ET     E  +++D   AAE+     + E     LER+   L +E    R + +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ Q+  Q E  + ++ SYQ +YKQLV++L  LGV P+  VG
Sbjct:   23 VETPNDPVETPSASDPGSAAEVSPQTGNNEARLEQLEREHTTLRDEHDVLRGQYMRIAADFDNFRKRQSRDQDDLKIQLTCSTLSEILPVVDNFERARQQLDPQGEEAQALHRSYQGLYKQLVDVLKQLGVAPMRVVG 160          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_SYNE7 (Protein grpE OS=Synechococcus elongatus (strain PCC 7942) GN=grpE PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.445e-18
Identity = 54/132 (40.91%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  212 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP 607
            EA++  D T A+  EA   + +   +  +R    L  EL  + +  LR++ADF+NFR+RT KER  L   ++   +  LL V+DNF+RA+ QIK Q E  E I+ SYQ +YKQLV+ L  +GV P+   G P
Sbjct:   21 EAVSEPDVTVASGQEAAELAAQLALVAADRD--RLKTELDEQNSAYLRLAADFENFRRRTLKEREELELQSKRTTITELLPVIDNFDRARAQIKPQGEEAEAIHKSYQGLYKQLVDCLKRIGVSPMRAEGQP 150          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_CYAP7 (Protein grpE OS=Cyanothece sp. (strain PCC 7424) GN=grpE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.465e-18
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  254 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP 607
            E+LL++ +  K  LE +    ++++ A + R + ++A+FDNFRKRT +E+  L   A+ + +  LL V+DNFERA+ QIK   EGE +I+ SYQ +YK LV+ L  LGV  +   G P
Sbjct:  103 ESLLQTNQSLKDQLEEQ----NQQIDAAKRRYIGLAAEFDNFRKRTLREKEELEKQAKRKTLSELLTVVDNFERARLQIKPSNEGEGEIHKSYQGVYKNLVDSLKRLGVSAMRAEGEP 216          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_ANASP (Protein grpE OS=Anabaena sp. (strain PCC 7120) GN=grpE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 2
Query:  290 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            +L +++ +L  +L     + +RI+ADF+N+RKRT+KE+  L    +   +  LL ++DNFERA++ +K QTE E  I+ SYQ +YKQLV+ L  LGV P+   G
Sbjct:   79 ELTQQISSLKTQLDERSTQYMRIAADFENYRKRTQKEKEELDLQVKRNTILELLPIVDNFERARSHLKPQTESEMTIHKSYQGVYKQLVDSLKRLGVSPMRPEG 182          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_ANAVT (Protein grpE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=grpE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.173e-18
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 2
Query:  290 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            +L +++ +L  +L     + +RI+ADF+N+RKRT+KE+  L    +   +  LL ++DNFERA++ +K QTE E  I+ SYQ +YKQLV+ L  LGV P+   G
Sbjct:   79 ELTQQINSLKTQLDERSTQYMRIAADFENYRKRTQKEKEELDLQVKRNTILELLPIVDNFERARSHLKPQTESEMTIHKSYQGVYKQLVDSLKRLGVSPMRPEG 182          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_PROMS (Protein grpE OS=Prochlorococcus marinus (strain AS9601) GN=grpE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.726e-17
Identity = 45/139 (32.37%), Postives = 82/139 (58.99%), Query Frame = 2
Query:  188 METLQSYKEALASNDDTKAAEIEAL-LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            +E + S +E    N++  + + E +  +  ++   + + ++  L +E    + + +RISADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q+K ++E  + ++ SYQ +YKQLVE+L   GV P+  VG
Sbjct:   23 LENVSSAQELTTENNELSSQKTEEINTEELKNSISNNDARLEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQLVSKTLTAILPIVDNFERARQQLKPESEEAQSLHRSYQGLYKQLVEVLKQQGVSPMRVVG 161          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_GLOVI (Protein grpE OS=Gloeobacter violaceus GN=grpE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.726e-17
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  203 SYKEALASNDDTKAAEIEALLKSFED---EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP 607
            SY EA  +  +  AAE    +   +    E  DL++K+ +  ++ +       R+ ADFDNFRKRT++E+  L      ++++ +L V DNF+RA+   +   E EEK++NSYQ +Y+Q + +L  +GV  +E +G P
Sbjct:   17 SYAEAATT--EASAAEATGFIARIDQLAAENSDLQKKLADYEQKYT-------RLMADFDNFRKRTQREKDELAYFVSAKLLKDILPVFDNFDRARAFAQPDNEREEKLHNSYQQVYRQFLSVLEKMGVTAMEAIGQP 145          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_TRIEI (Protein grpE OS=Trichodesmium erythraeum (strain IMS101) GN=grpE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  218 LASNDDTKAAEIEALLK-SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGV 580
            + S + T   + + LLK ++E  +  LE     L E+ S  +    R+ ADFDNFRKRT+KE+  L T  +   +  LL V+DNFERA++ IK   +GE  I+ SYQS+YKQ+V+ L  LGV
Sbjct:   54 IQSTESTSKEKDQVLLKEAYELLQTQLETTKYQLEEKESQYK----RLGADFDNFRKRTQKEKEDLDTQVKCSTIMELLPVIDNFERARSHIKPANDGEMAIHKSYQSVYKQMVDSLKRLGV 171          
The following BLAST results are available for this feature:
BLAST of CX298129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRPE_THEEB4.493e-2036.43Protein grpE OS=Thermosynechococcus elongatus (str... [more]
GRPE_SYNY31.307e-1938.98Protein grpE OS=Synechocystis sp. (strain PCC 6803... [more]
GRPE_SYNPW2.912e-1937.68Protein grpE OS=Synechococcus sp. (strain WH7803) ... [more]
GRPE_SYNE71.445e-1840.91Protein grpE OS=Synechococcus elongatus (strain PC... [more]
GRPE_CYAP72.465e-1841.53Protein grpE OS=Cyanothece sp. (strain PCC 7424) G... [more]
GRPE_ANASP5.492e-1842.31Protein grpE OS=Anabaena sp. (strain PCC 7120) GN=... [more]
GRPE_ANAVT7.173e-1842.31Protein grpE OS=Anabaena variabilis (strain ATCC 2... [more]
GRPE_PROMS2.726e-1732.37Protein grpE OS=Prochlorococcus marinus (strain AS... [more]
GRPE_GLOVI2.726e-1734.06Protein grpE OS=Gloeobacter violaceus GN=grpE PE=3... [more]
GRPE_TRIEI3.560e-1742.62Protein grpE OS=Trichodesmium erythraeum (strain I... [more]

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Properties
Property NameValue
Genbank descriptionC06008H06SK RindPdig24 Citrus clementina cDNA clone C06008H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298129 ID=CX298129; Name=CX298129; organism=Citrus clementina; type=EST; length=613bp
GTTCGTAAAGTTCTCTCCTTTAGCTTCAACTGGAGAAACTGAAACCCAAG
AGGAAATTCAGGAACCCCAAATTGAGGAATCTTCCGATGGTGCTGTTGGC
ATTGAAGATGGCACTAGTGACGATGATAGCTCTGGAGCTACTAGTGATGA
CACCTCAGATGCTGAGGAAGCACCTACTTCATTCATTATGGAAACACTCC
AATCATACAAAGAAGCTTTGGCCAGTAATGACGATACCAAAGCTGCTGAA
ATAGAGGCTTTATTAAAATCCTTTGAAGATGAGAAAATTGATCTTGAGAG
GAAAGTTGTTAACTTGTCTGAAGAATTGTCAGCTGAGAGGGCTCGTATTC
TTAGGATCAGTGCTGACTTTGACAATTTTCGTAAGAGAACGGAGAAGGAA
CGCCTTTCACTGGTAACAAATGCTCAAGGAGAAGTCATGGAGAGATTGTT
GCAAGTTTTGGATAATTTTGAGAGAGCTAAAACTCAAATTAAGGTGCAGA
CCGAGGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAGCAA
TTAGTGGAAATCCTAGGATCACTTGGTGTTGTTCCTGTGGAGACGGTTGG
GAATCCCCTTTGA
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