CX298228

Overview
NameCX298228
Unique NameCX298228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length310
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:475..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_ELAUM (S-adenosylmethionine synthetase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.312e-54
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE+MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  130 ATDETPEYMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 231
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.075e-53
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  130 ATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 231
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.075e-53
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPEFMPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGA VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  130 ATDETPEFMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 231
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK3_PETHY (S-adenosylmethionine synthetase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.075e-53
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPEFMPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIA DLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  130 ATDETPEFMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAHDLKEHVIKPVIPEKYLDEKTIFH 231
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.075e-53
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE+MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYN+NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  130 ATDETPEYMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 231
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.709e-53
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  134 ATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 235
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.709e-53
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  134 ATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 235
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 2.709e-53
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  134 ATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 235
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_CATRO (S-adenosylmethionine synthetase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.622e-53
Identity = 97/102 (95.10%), Postives = 102/102 (100.00%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPEFMPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTV+ISTQHDETVTND+IAADLKEHVIKPVIPEKYLDE+TIFH
Sbjct:  130 ATDETPEFMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVVISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDERTIFH 231
[Close]
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.036e-53
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYN+NGAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH
Sbjct:  134 ATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDNGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 235
The following BLAST results are available for this feature:
BLAST of CX298228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_ELAUM9.312e-5497.06S-adenosylmethionine synthetase 1 OS=Elaeagnus umb... [more]
METK_MESCR2.075e-5397.06S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK_CARPA2.075e-5397.06S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK3_PETHY2.075e-5397.06S-adenosylmethionine synthetase 3 OS=Petunia hybri... [more]
METK1_POPTR2.075e-5396.08S-adenosylmethionine synthetase 1 OS=Populus trich... [more]
METK4_ATRNU2.709e-5396.08S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK3_ATRNU2.709e-5396.08S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK1_ATRNU2.709e-5396.08S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK1_CATRO4.622e-5395.10S-adenosylmethionine synthetase 1 OS=Catharanthus ... [more]
METK1_BETVU6.036e-5395.10S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06010A02SK RindPdig24 Citrus clementina cDNA clone C06010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298228 ID=CX298228; Name=CX298228; organism=Citrus clementina; type=EST; length=310bp
ATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGTCATGTTCTTGCC
ACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAATGGCACTTGCCC
TTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTGAGTATTACAATG
AGAATGGTGCTATGGTTCCTGTGAGAGTTCACACAGTTTTGATCTCTACT
CAGCATGACGAAACTGTGACTAATGATGAGATCGCTGCTGATTTGAAAGA
GCATGTGATCAAGCCTGTTATTCCTGAGAAGTACCTTGATGAGAAGACTA
TCTTCCATCT
back to top