CX298229

Overview
NameCX298229
Unique NameCX298229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298229_ssr159 microsatellite CX298229_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig541 contig Ccv1_Contig541:229..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.303e-52
Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 327
            HGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKK+ND LKADAKARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   58 HGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.222e-52
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 327
            HGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKKKNDELKA AKA GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   58 HGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK-ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 300
            HGRTG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R K+ND++K DA  A+  V STKR P  PK G ++  +G   ET   IPY+
Sbjct:   58 HGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   10 GRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 300
            G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   59 GKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 47/99 (47.47%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   10 GRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 300
            G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   59 GKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYDVV 306
            HGRTGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R ++N +   +AK  G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct:   58 HGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 300
            HG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   58 HGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 300
            HG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   58 HGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21_CAPHI (60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-19
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 300
            HG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   58 HGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CX298229 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    7 HGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 300
            HG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +    QP  P+    V   G   E + PIPY+
Sbjct:   58 HGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLNGQPAPPREAHFVRTNGKEPELLEPIPYE 157          
The following BLAST results are available for this feature:
BLAST of CX298229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL212_ARATH1.303e-5289.7260S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH2.222e-5289.7260S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL21_CYAPA2.167e-2358.4260S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21B_YEAST2.929e-2047.4760S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21A_YEAST2.929e-2047.4760S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21_DICDI4.997e-2048.0460S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21_HUMAN1.454e-1945.0060S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
RL21_CHILA1.454e-1945.0060S ribosomal protein L21 OS=Chinchilla lanigera G... [more]
RL21_CAPHI1.899e-1945.0060S ribosomal protein L21 OS=Capra hircus GN=RPL21... [more]
RL21_RAT4.677e-1843.0060S ribosomal protein L21 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06010A03SK RindPdig24 Citrus clementina cDNA clone C06010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298229 ID=CX298229; Name=CX298229; organism=Citrus clementina; type=EST; length=501bp
GTTCTCCATGGGCGTACAGGCCGTGTCTGGAATGTCACCAAGCGCGCCAT
CGGCGTGGAGATTAACAAGCAGGTTGGTAACAGGATCATCAAGAAGAGGA
TTCATGTTCGTGTGGAGCATGTTCAACCTTCAAGGTGTACCGAGGAGTTC
AAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCAGATGCTAAGGCAAG
AGGTGAGGTCATCAGTACAAAGAGGCAGCCAAAGGGCCCTAAACCAGGTT
TCATGGTGGAAGGTGCAACATTGGAAACTGTCACTCCTATTCCTTATGAT
GTCGTCAATGATCTTAAGGGTGGTTACTAGGTTATCTTTTTGGTATTGTT
GCTGTTTTGTTACTTGTTGCAGACTTTTCTGGACATGGTCTTATTTGGAT
GTATTTTCATCCTTATTAGTTTTGTTTTTGGAGAGGAACTGCAATTGCAG
AGATGTTTATTTTTAATCTTCATTTTATATTAGAAACAAGAGATGTTTTC
C
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