CX298230

Overview
NameCX298230
Unique NameCX298230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15109 contig Ccv1_Contig15109:205..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFRH_SOLTU (Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.094e-95
Identity = 173/223 (77.58%), Postives = 195/223 (87.44%), Query Frame = 2
Query:   23 SLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            + +  GV  V GD+ +HESLVKAIKQVDVVISTVGH LL DQVK+IAAIKEAGN+KRFFPSEFGNDVDRVHAVEPAK+AF TKA+IRR VEAEGIP+TYVA+ FFA Y LPNL+QPGA  PP DKVVILG GN KAV+NKE+DIGTYTI AVDDP+TLNKILYIKPP NI + N+LVSLWE+K GK L+R+YVPEEQVLKNIQEA+ P+NV LSI H+AFVKG
Sbjct:   51 TFKSFGVTFVHGDLYDHESLVKAIKQVDVVISTVGHALLADQVKLIAAIKEAGNVKRFFPSEFGNDVDRVHAVEPAKAAFNTKAQIRRVVEAEGIPFTYVATFFFAGYSLPNLAQPGAAGPPNDKVVILGHGNTKAVFNKEEDIGTYTINAVDDPKTLNKILYIKPPHNIITLNELVSLWEKKTGKNLERLYVPEEQVLKNIQEASVPMNVGLSIYHTAFVKG 273          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFRH_ARATH (Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.367e-82
Identity = 152/226 (67.26%), Postives = 182/226 (80.53%), Query Frame = 2
Query:   20 RSLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQ--PGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            +S + LGV ++ GD+ +HESLVKAIKQVDVVISTVG   + DQ KII+AIKEAGN+KRF PSEFG DVDR  AVEPAKSAFA K +IRR +EAEGIPYTY  +  F  Y+LP L Q  PG T+PPRDKV ILGDGN KAV NKE+DI  YTIKAVDDPRTLNKILYIKP  N  S N++V+LWE+KIGK+L++ ++PEEQ+LK+IQE+  P+NV+LSI H+ FV G
Sbjct:   51 QSFKDLGVTILHGDLNDHESLVKAIKQVDVVISTVGSMQILDQTKIISAIKEAGNVKRFLPSEFGVDVDRTSAVEPAKSAFAGKIQIRRTIEAEGIPYTYAVTGCFGGYYLPTLVQFEPGLTSPPRDKVTILGDGNAKAVINKEEDIAAYTIKAVDDPRTLNKILYIKPSNNTLSMNEIVTLWEKKIGKSLEKTHLPEEQLLKSIQESPIPINVVLSINHAVFVNG 276          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFRH_TOBAC (Isoflavone reductase homolog A622 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.073e-78
Identity = 145/223 (65.02%), Postives = 172/223 (77.13%), Query Frame = 2
Query:   23 SLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            + +  GV L+ GD+ N ESL+KAIKQVDVVISTVG     DQV II AIKEAGNIKRF PSEFG DVD   A+EPA S FA K +IRR +EAEGIPYTYV  N+FA +FLPNL Q  A  PPRDKVVI GDGNPKA+Y KE+DI TYTI+AVDDPRTLNK L+++PP NI SFN++VSLWE KIGKTL+++Y+ EE +L+ +QE   P+   L+I HS FV G
Sbjct:   53 TFKSYGVTLLFGDISNQESLLKAIKQVDVVISTVGGQQFTDQVNIIKAIKEAGNIKRFLPSEFGFDVDHARAIEPAASLFALKVRIRRMIEAEGIPYTYVICNWFADFFLPNLGQLEAKTPPRDKVVIFGDGNPKAIYVKEEDIATYTIEAVDDPRTLNKTLHMRPPANILSFNEIVSLWEDKIGKTLEKLYLSEEDILQIVQEGPLPLRTNLAICHSVFVNG 275          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFR_MEDSA (Isoflavone reductase OS=Medicago sativa GN=IFR PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.102e-71
Identity = 132/221 (59.73%), Postives = 168/221 (76.02%), Query Frame = 2
Query:   29 QKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            Q LGV L+ GD+ +HE+LVKAIKQVD+VI   G  L+ DQVKII AIKEAGN+K+FFPSEFG DVDR  AVEP +  F  KA IRR +EAEG+PYTY+  + F  YFL NL+Q   T PPRDKVVILGDGN K  Y  E D+GT+TI+A +DP TLNK ++I+ P N  + N++++LWE+KIGKTL++ YV EEQVLK+IQE++ P N +L++ HS  +KG
Sbjct:   64 QSLGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHEAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDTTDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPENYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKG 284          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFR_PEA (Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.714e-70
Identity = 130/224 (58.04%), Postives = 167/224 (74.55%), Query Frame = 2
Query:   20 RSLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            ++ Q  GV L+ GD+ +HE+LV AIKQVD VI   G  L+ DQVK+I AIKEAGN+KRFFPSEFG DVDR  AVEP +  F  KA IRR VE+EG+PYTY+  + F  YFL NL+Q  AT PPRDKVVILGDGN +  Y  E D+GTYTI+A +DP TLNK ++I+ P N  + N++++LWE+KIGKTL++ YV EEQVLK+IQ ++ P N +L++ HS  +KG
Sbjct:   61 KNYQASGVILLEGDINDHETLVNAIKQVDTVICAAGRLLIEDQVKVIKAIKEAGNVKRFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRVVESEGVPYTYLCCHAFTGYFLRNLAQIDATDPPRDKVVILGDGNVRGAYVTEADVGTYTIRAANDPNTLNKAVHIRLPNNYLTANEVIALWEKKIGKTLEKTYVSEEQVLKDIQTSSFPHNYLLALYHSQQIKG 284          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFR_CICAR (Isoflavone reductase OS=Cicer arietinum GN=IFR PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.545e-70
Identity = 133/224 (59.38%), Postives = 168/224 (75.00%), Query Frame = 2
Query:   20 RSLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            +S +  GV L+ GD+ +HE+LVKAIKQVD VI T G  L+ DQVKII AIKEAGN+KRFFPSEFG DVDR  AV+P +  F  KA IRR VEAEG+PYTY+  + F  YFL NL+Q  AT PPRDKV+ILGDGN K  Y  E D+GTYTI+A +DPRTLNK ++I+ P N  + N++VSLWE+KIGKTL++ Y+ EE+VLK+I  +  P N +L++ HS  +KG
Sbjct:   61 QSFKAAGVILLEGDMNDHEALVKAIKQVDTVICTFGRLLILDQVKIIKAIKEAGNVKRFFPSEFGLDVDRHDAVDPVRPVFDEKASIRRVVEAEGVPYTYLCCHAFTGYFLRNLAQFDATEPPRDKVIILGDGNVKGAYVTEADVGTYTIRAANDPRTLNKAVHIRLPHNYLTSNEVVSLWEKKIGKTLEKSYISEEKVLKDINVSTFPHNYLLALYHSQQIKG 284          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFRH_MAIZE (Isoflavone reductase homolog IRL OS=Zea mays GN=IRL PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.630e-70
Identity = 131/224 (58.48%), Postives = 161/224 (71.88%), Query Frame = 2
Query:   20 RSLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            +S Q  GV L+ GD+ +  SLV A+K  DVVIS +G   + DQ +++ AIKEAGN+KRFFPSEFG DVDR   VEPAKS    K  IRRA EA GIPYTY  + FFA + LP + Q  A  PP DK V+LGDG+ KAV+ +E DI TYT+ A DDPR  NK+LYIKPP N  S N+L+SLWE+K GKT +R YVPEE VLK IQE+  P+N+IL+I H+AFV+G
Sbjct:   51 KSFQDAGVTLLKGDLYDQASLVSAVKGADVVISVLGSMQIADQSRLVDAIKEAGNVKRFFPSEFGLDVDRTGIVEPAKSILGAKVGIRRATEAAGIPYTYAVAGFFAGFGLPKVGQVLAPGPPADKAVVLGDGDTKAVFVEEGDIATYTVLAADDPRAENKVLYIKPPANTLSHNELLSLWEKKTGKTFRREYVPEEAVLKQIQESPIPLNIILAIGHAAFVRG 274          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IGS1_PETHY (Isoeugenol synthase 1 OS=Petunia hybrida GN=IGS1 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.686e-52
Identity = 104/224 (46.43%), Postives = 145/224 (64.73%), Query Frame = 2
Query:   20 RSLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            +  + LGV +  G++  H+ LV   K+VD+VIST+      +Q+K+I AIKEAGNIKRF PSEFGN+VDRV A+   ++    K KIRRA EA GIP+T+V++N   AYF+  L  P   +   ++V I G G+ KAV N E+D+  YTIKA DDPR  N++L IKPP NI S  DLVS WE+  G TL+  ++ E++++K  +    P N+  SI H+ F+ G
Sbjct:   52 KEFESLGVTIFYGELSEHDKLVAVFKEVDIVISTLAVPQYLEQLKVIEAIKEAGNIKRFVPSEFGNEVDRVRALPRFQAVLDNKKKIRRATEAAGIPFTFVSANSLTAYFVDYLLHPRQKS---EQVTIYGSGDAKAVLNYEEDVAAYTIKAADDPRAANRVLIIKPPKNIVSQLDLVSSWEKTTGSTLKMTHISEQEIIKLSESINFPENIHASILHNIFIAG 272          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: IFRH_LUPAL (Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50
Identity = 103/210 (49.05%), Postives = 138/210 (65.71%), Query Frame = 2
Query:   23 SLQKLGVNLVIGDVLNHESLVKAIKQVDVVISTVG------HTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRV-HAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQ 631
            S +K G  LV     +H+SLV A+K VDVVI T+       H LL  Q+K++ AIK+AGNIKRF PSEFG D   + HA+EP +  F  K  +R+A+E   IP+TY+++N FA YF  NLSQ     PPRDKV++ GDGN K VY  EDD+ TYTIK +DDPRTLNK +Y++PP NI +  +L+  WE  IGK L++  + E+  L  ++
Sbjct:   50 SFKKQGAILVEASFSDHKSLVDAVKLVDVVICTMSGVHFRSHNLL-TQLKLVEAIKDAGNIKRFLPSEFGMDPALMGHALEPGRVTFDEKMTVRKAIEEANIPFTYISANCFAGYFAGNLSQMKTLLPPRDKVLLYGDGNVKPVYMDEDDVATYTIKTIDDPRTLNKTVYLRPPENILTHKELIEKWEELIGKQLEKNSISEKDFLSTLK 258          
BLAST of CX298230 vs. ExPASy Swiss-Prot
Match: EGS1_OCIBA (Eugenol synthase 1 OS=Ocimum basilicum GN=EGS1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50
Identity = 102/234 (43.59%), Postives = 150/234 (64.10%), Query Frame = 2
Query:    2 RPISAPRSL----QKLGVNLVIGDVLNHESLVKAIKQVDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEQVLKNIQEAAPPVNVILSIQHSAFVKG 691
            RP S+  +L    Q LG  +V G++  HE LV+ +K+VDVVIS +    + DQ KI+ AIK AGNIKRF PS+FG + DR++A+ P ++    K  IRRA+E   IPYTYV++N FA+YF+  L +P     P+D++ + G G  K   N E DIG YTIK   DPR LN+++  +P  NI +  +L+S WE+KIGK  ++++VPEE+++   +E   P N+ ++I H  F+ G
Sbjct:   39 RPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDG 269          
The following BLAST results are available for this feature:
BLAST of CX298230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IFRH_SOLTU1.094e-9577.58Isoflavone reductase homolog OS=Solanum tuberosum ... [more]
IFRH_ARATH2.367e-8267.26Isoflavone reductase homolog P3 OS=Arabidopsis tha... [more]
IFRH_TOBAC2.073e-7865.02Isoflavone reductase homolog A622 OS=Nicotiana tab... [more]
IFR_MEDSA1.102e-7159.73Isoflavone reductase OS=Medicago sativa GN=IFR PE=... [more]
IFR_PEA2.714e-7058.04Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 ... [more]
IFR_CICAR3.545e-7059.38Isoflavone reductase OS=Cicer arietinum GN=IFR PE=... [more]
IFRH_MAIZE4.630e-7058.48Isoflavone reductase homolog IRL OS=Zea mays GN=IR... [more]
IGS1_PETHY5.686e-5246.43Isoeugenol synthase 1 OS=Petunia hybrida GN=IGS1 P... [more]
IFRH_LUPAL2.389e-5049.05Isoflavone reductase homolog OS=Lupinus albus PE=2... [more]
EGS1_OCIBA5.321e-5043.59Eugenol synthase 1 OS=Ocimum basilicum GN=EGS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06010A04SK RindPdig24 Citrus clementina cDNA clone C06010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298230 ID=CX298230; Name=CX298230; organism=Citrus clementina; type=EST; length=695bp
GAGGCCAATCTCAGCTCCTCGATCACTTCAAAAACTCGGCGTCAATCTCG
TCATCGGAGATGTGTTGAATCACGAGAGCTTGGTGAAGGCGATAAAACAA
GTGGACGTGGTGATATCAACGGTCGGTCACACTTTATTAGGTGATCAGGT
CAAGATTATTGCGGCCATTAAAGAAGCTGGTAACATTAAGAGATTCTTCC
CTTCAGAATTTGGGAATGATGTTGATCGAGTCCATGCCGTTGAGCCAGCA
AAATCAGCATTTGCCACAAAGGCAAAAATCCGCCGAGCCGTTGAGGCTGA
AGGGATTCCGTATACTTATGTAGCGTCGAATTTCTTTGCTGCTTACTTCC
TTCCCAATTTGTCGCAGCCCGGGGCCACTGCCCCACCTAGGGATAAAGTT
GTCATCTTAGGCGATGGAAATCCAAAAGCTGTTTATAACAAGGAAGATGA
TATTGGAACCTATACTATCAAAGCGGTTGATGATCCCAGAACCTTGAACA
AAATCCTTTACATTAAACCCCCTGGTAATATTTACTCATTCAATGATCTT
GTGTCCTTGTGGGAGAGAAAGATTGGCAAAACCCTCCAAAGGGTGTACGT
TCCGGAGGAGCAAGTCCTAAAGAATATTCAAGAAGCTGCACCTCCAGTCA
ATGTGATATTATCAATTCAGCACTCTGCTTTCGTGAAAGGGAGAT
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