CX298235

Overview
NameCX298235
Unique NameCX298235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298235_ssr106 microsatellite CX298235_ssr106:106..117. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig741 contig Ccv1_Contig741:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298235 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.568e-57
Identity = 100/127 (78.74%), Postives = 114/127 (89.76%), Query Frame = 2
Query:  254 PRKRLISFKVHATLAETNQPKWWEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQK 634
            P+ +++  KV   +AET  PKWWE+NAPNM+DIHST+EFL ALS AG+RLVIVEFYGTWCASCRALFPKLC+TA EHP+IVFLKVNFDENKPMCKSLNV+VLP+FHFYRGA GQLESFSCSLAK +K
Sbjct:   76 PKSQVVRVKVDENVAETEPPKWWERNAPNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVKK 202          
BLAST of CX298235 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.319e-53
Identity = 104/159 (65.41%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  179 ISDNKRIYPLXXXXXXXGLARFSL------TPRKRLISFKVHATLAETNQPKWWEKNA-PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQK 634
            +S   R Y L        L   SL      + R + +S KV A  AET QPKWWE+ A PNMIDI S ++FL AL  AGDRLVIV+FYGTWC SCRA+FPKLC+TA+EHP I+FLKVNFDENK +CKSLNVKVLPYFHFYRGA GQ+ESFSCSLAKFQK
Sbjct:   34 LSSCNRFYGLSSSSSSSSLTTSSLIGNLVFSSRNQSLSVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQK 192          
BLAST of CX298235 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.163e-31
Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 2
Query:  260 KRLISFKVHATLAETNQPKWWEKNAP-NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQK 634
            +R  +     TL      KWWEK    NM +I S QE +++L+ AGD+LV+V+F+   C  C+AL PK+C+ AE +P++ FL+VN++E+K MC SL V VLP+F FYRG+ G++ SFSC+ A  +K
Sbjct:   71 RRSSAITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKK 196          

HSP 2 Score: 30.0314 bits (66), Expect = 2.163e-31
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  625 VSKIKEAIALHNTDRCSIGP 684
            + K ++A+A H  DRCS+GP
Sbjct:  194 IKKFRDALAKHGPDRCSLGP 213          
BLAST of CX298235 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.032e-30
Identity = 58/133 (43.61%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  248 LTPRKRLISF-KVHATLAETNQPKWWEKNA-PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQK*K 640
            L  +K++ +F +   +L      KWWEK   PNM  + S Q+ + +L  AGD+LV+V+F+   C  C+AL PK+C+ AE++PE+ FL+VN++E++ +C+SLN+ VLP+F FYRG+ G++ SFSC+ A  +K K
Sbjct:   62 LFSKKKIPAFVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFK 194          

HSP 2 Score: 25.0238 bits (53), Expect = 3.032e-30
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  625 VSKIKEAIALHNTDRCSIG 681
            + K KEA+  H  ++CSIG
Sbjct:  190 IRKFKEALEKHGREQCSIG 208          
BLAST of CX298235 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-29
Identity = 54/111 (48.65%), Postives = 79/111 (71.17%), Query Frame = 2
Query:  314 KWWEKNAP-NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQK*KR 643
            +WWEK+   NM++I S    +++L  AGDRLV+++FY   C  C++L PK+C+ AE +P ++FLKVN +E + MC  LNV VLP+F FYRGA G++ SFSC++A   K K+
Sbjct:   77 RWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKK 187          

HSP 2 Score: 25.409 bits (54), Expect = 2.509e-29
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  625 VSKIKEAIALHNTDRCSIG 681
            ++K K+A+  H ++RCS+G
Sbjct:  182 INKFKKALDKHGSERCSLG 200          
BLAST of CX298235 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  365 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 580
            +F +AL  AGD+LV+++F  +WC  C+ + PK    A+E P+++F KV+ DEN    ++  ++ +P F FY+
Sbjct:   10 DFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYK 81          
BLAST of CX298235 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 31/92 (33.70%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  341 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFP--KLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFS 610
            ++ I +   F  AL  AGD+LV+V+F  TWC  C+ + P  +    +E++  +VFLKV+ D+   +    ++K +P FHFY+    +++ FS
Sbjct:    2 VVHIENLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQ-KIDEFS 92          
The following BLAST results are available for this feature:
BLAST of CX298235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRXL6_ARATH2.568e-5778.74Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH1.319e-5365.41Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL1_ARATH2.163e-3146.03Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH3.032e-3043.61Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH2.509e-2948.65Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
THIO_GEOCY7.321e-1237.50Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_ICTPU8.094e-1133.70Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC06010A09SK RindPdig24 Citrus clementina cDNA clone C06010A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298235 ID=CX298235; Name=CX298235; organism=Citrus clementina; type=EST; length=686bp
TTCTATTTTATTGTCATTTCTCTTTAAATTCAAAATTTAATTCTATCTCG
GCAACCCGTAAATGGCAGATGTTATAAGGGCATGTTCATTTCAGTCACTT
CGTTTTTCTTCTTCTTCAGTGCTCACCTCATTTTCCTCAACGTCGGGTTG
CCTTCAACTGGGTCTGCCTCCTAATCAAATTTCAGATAATAAGAGAATCT
ATCCTCTTGCTGCTGCTTCTTCTTCTGCTGGCCTTGCTCGCTTTTCATTG
ACACCCAGGAAGCGTTTAATCTCATTTAAGGTACATGCAACCCTTGCTGA
AACCAACCAGCCAAAATGGTGGGAAAAAAACGCACCAAATATGATTGACA
TTCATTCTACACAGGAATTTTTAGAAGCCCTGAGTCAAGCTGGTGATAGA
TTAGTCATTGTTGAATTTTATGGAACCTGGTGTGCATCATGCCGGGCATT
ATTTCCAAAGCTCTGTAGGACAGCTGAGGAACATCCTGAGATTGTATTCC
TAAAAGTCAATTTTGATGAGAACAAACCAATGTGCAAAAGTTTGAATGTG
AAGGTGCTTCCTTATTTCCACTTTTACCGCGGCGCCCATGGACAGTTAGA
ATCATTTTCGTGTTCACTTGCTAAGTTTCAAAAATAAAAGAGGCCATAGC
ACTGCACAATACGGATCGTTGCAGCATTGGCCCACC
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