CX298237

Overview
NameCX298237
Unique NameCX298237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig742 contig Ccv1_Contig742:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.918e-66
Identity = 123/163 (75.46%), Postives = 136/163 (83.44%), Query Frame = 3
Query:    6 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 494
            TGEDYSVEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P  KKS+K  P  HKRYNLKKLTY+ERKARLVERL ALN
Sbjct:  126 TGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 288          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 8.170e-64
Identity = 114/163 (69.94%), Postives = 137/163 (84.05%), Query Frame = 3
Query:    6 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 494
            TGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN KK+EK  P EHKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  126 TGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.820e-63
Identity = 115/163 (70.55%), Postives = 132/163 (80.98%), Query Frame = 3
Query:    6 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 494
            TGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  127 TGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.377e-63
Identity = 115/163 (70.55%), Postives = 132/163 (80.98%), Query Frame = 3
Query:    6 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 494
            TGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  127 TGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.377e-63
Identity = 115/163 (70.55%), Postives = 132/163 (80.98%), Query Frame = 3
Query:    6 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 494
            TGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  127 TGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.055e-63
Identity = 114/163 (69.94%), Postives = 136/163 (83.44%), Query Frame = 3
Query:    6 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 494
            TGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN KK+ K  P +HKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  126 TGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 84/106 (79.25%), Postives = 92/106 (86.79%), Query Frame = 3
Query:  177 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 494
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEERKA+L+ERL ALN
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 3
Query:    6 TGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSE-KKPPAEHKRYNLKKLTYEERKARLVER 479
            TG++Y+VEP +N    FR  LDVGL +TTTG RVF            +PHS KRF G+  +SK+ +AEVHR +I+  HVA YMR+L +D+ + ++  F +YIK G+ AD +E +YKK H AIRADP+ KK E KK   + KR+N +KLT  ERK R+ ++
Sbjct:  126 TGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 76/161 (47.20%), Postives = 105/161 (65.22%), Query Frame = 3
Query:    9 GEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 488
            G++Y+VE  ++    FR  LD GL++TTTG R+F            IPHS KRF G+  +SK  +A+VHR++I+  H+A YM+TL E+EPE +Q  F +YIK GI AD +EE+YKK H AIRADP++ +  K      KR+N  KLT  ERK R V+++KA
Sbjct:  127 GDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of CX298237 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.577e-35
Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 3
Query:    6 TGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARL 470
            TGE+++VEP ++    FR  LDVGL +TTTG RVF            IPHS KRF G+S ++K  +A+VHR +I+  HVA YMR+L E++ E ++  F  YIK GI AD+LE++YKK H AIR DP  K + KK  A   KR+N KKLT E+RK ++
Sbjct:  126 TGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
The following BLAST results are available for this feature:
BLAST of CX298237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_CUCSA3.918e-6675.4660S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH8.170e-6469.9460S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL52_ORYSJ1.820e-6370.5560S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ2.377e-6370.5560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI2.377e-6370.5560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ARATH4.055e-6369.9460S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL5_SOLME9.391e-4479.2560S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_BOMMO1.897e-3648.1360S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_LYSTE2.739e-3547.2060S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_DROME3.577e-3549.0460S ribosomal protein L5 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionC06010A11SK RindPdig24 Citrus clementina cDNA clone C06010A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298237 ID=CX298237; Name=CX298237; organism=Citrus clementina; type=EST; length=683bp
GAGGCACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCT
TTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCG
TGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTC
ACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGAC
GCTGAAGTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACAT
GAGGACTTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTG
AATACATCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAG
AAGGTACATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAA
GAAGCCTCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACG
AGGAAAGGAAAGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCT
GAAGACGATGAAGCCGATGAGTGAATGCGATACTAGGAAGTTTTTGTTTC
TTAGTTCAATAGGTTATTTTCAGAGATTACTAAAATTAAAGAACCTGGCT
TGTTTGATAGGTTGAGAACAGTGTTGTTTCTATGAGCTTTCAATGCTGAT
GAGACCTGGTTGTTTGCTGAAAAAAAAAAAAAA
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