CX298241

Overview
NameCX298241
Unique NameCX298241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298241_ssr103 microsatellite CX298241_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10B_YEAST (40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.570e-23
Identity = 47/65 (72.31%), Postives = 59/65 (90.77%), Query Frame = 1
Query:    7 KHSDIDTKNLYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPATHIKQQ 201
            KH +IDTKNLYVIKALQSL S+G+VKTQFSWQYYYYTLT EG++YLRE+L+LP  +VP T+I+++
Sbjct:   31 KHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQER 95          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10A_YEAST (40S ribosomal protein S10-A OS=Saccharomyces cerevisiae GN=RPS10A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.570e-23
Identity = 47/65 (72.31%), Postives = 59/65 (90.77%), Query Frame = 1
Query:    7 KHSDIDTKNLYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPATHIKQQ 201
            KH +IDTKNLYVIKALQSL S+G+VKTQFSWQYYYYTLT EG++YLRE+L+LP  +VP T+I+++
Sbjct:   31 KHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQER 95          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10B_SCHPO (40S ribosomal protein S10-B OS=Schizosaccharomyces pombe GN=rps10b PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.610e-22
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 LPKHSDIDTKNLYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPATHIKQQRSHAP 216
            LPKH ++   NL VIKA QSLDSRG++KT+++W ++YYTLT EG++YLRE+LHLPAEVVPATH +Q R  AP
Sbjct:   29 LPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAP 100          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10A_SCHPO (40S ribosomal protein S10-A OS=Schizosaccharomyces pombe GN=rps10a PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.610e-22
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 LPKHSDIDTKNLYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPATHIKQQRSHAP 216
            LPKH ++   NL VIKA QSLDSRG++KT+++W ++YYTLT EG++YLRE+LHLPAEVVPATH +Q R  AP
Sbjct:   29 LPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAP 100          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.854e-18
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 LPKHSDIDTKNLYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPATHIKQQRSHA 213
            LPKH +ID  NL+VI+A+QSL SRG+VK QF W++YY+ L  EG+ YLR++LHLP E+VPAT  +Q R  A
Sbjct:   29 LPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEA 99          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 LPKHSDIDTKN---LYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPAT 186
            +PKH ++  KN   L+V+KA+QSL SRG+VK QF+W+++Y+ LT EG+ YLR++LHLP E+VPAT
Sbjct:   29 MPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAT 93          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 LPKHSDIDTKN---LYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPAT 186
            +PKH ++  KN   L+V+KA+QSL SRG+VK QF+W+++Y+ LT EG+ YLR++LHLP E+VPAT
Sbjct:   29 MPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAT 93          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 LPKHSDIDTKN---LYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPAT 186
            +PKH ++  KN   L+V+KA+QSL SRG+VK QF+W+++Y+ LT EG+ YLR++LHLP E+VPAT
Sbjct:   29 MPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAT 93          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 LPKHSDIDTKN---LYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPAT 186
            +PKH ++  KN   L+V+KA+QSL SRG+VK QF+W+++Y+ LT EG+ YLR++LHLP E+VPAT
Sbjct:   29 MPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAT 93          
BLAST of CX298241 vs. ExPASy Swiss-Prot
Match: RS10_XENLA (40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 LPKHSDIDTKN---LYVIKALQSLDSRGFVKTQFSWQYYYYTLTPEGLDYLREWLHLPAEVVPAT 186
            +PKH ++  KN   L+V+KA+QSL SRG+VK QF+W+++Y+ LT EG+ YLR++LHLP E+VPAT
Sbjct:   29 MPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPAT 93          
The following BLAST results are available for this feature:
BLAST of CX298241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS10B_YEAST5.570e-2372.3140S ribosomal protein S10-B OS=Saccharomyces cerev... [more]
RS10A_YEAST5.570e-2372.3140S ribosomal protein S10-A OS=Saccharomyces cerev... [more]
RS10B_SCHPO3.610e-2265.2840S ribosomal protein S10-B OS=Schizosaccharomyces... [more]
RS10A_SCHPO3.610e-2265.2840S ribosomal protein S10-A OS=Schizosaccharomyces... [more]
RS10_LUMRU1.854e-1859.1540S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_RAT8.613e-1656.9240S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE8.613e-1656.9240S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_HUMAN8.613e-1656.9240S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]
RS10_BOVIN8.613e-1656.9240S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]
RS10_XENLA1.125e-1556.9240S ribosomal protein S10 OS=Xenopus laevis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionC06010B03SK RindPdig24 Citrus clementina cDNA clone C06010B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298241 ID=CX298241; Name=CX298241; organism=Citrus clementina; type=EST; length=605bp
CTTCCCAAGCACAGTGACATTGACACCAAGAACCTCTATGTCATCAAGGC
CCTCCAGTCCCTGGACTCCCGCGGCTTTGTCAAGACTCAGTTCTCGTGGC
AGTACTACTACTACACCCTCACTCCCGAGGGTCTGGACTACCTCCGTGAG
TGGCTCCACCTCCCCGCCGAGGTTGTCCCTGCCACCCACATCAAGCAGCA
GCGTTCCCACGCTCCCCCTCGCGGCATGATGGGCGGTGAGGAGCAGCGCG
GTGAGCGCCGTGGTCCCCGTGCTCCCCGTGAGGGCGGTTACCGCCGTCGC
GAGGAGGGTGGAAAGGAGGGCGGTGCCCCTGGCGAGTTCGCTCCCTCTTT
CCGTGGTGGCTTCGGCCGTGGCCGTGGCGCTGCTCCCCAGGAGTAAATGC
TGAGAGGCACTGATGTCCTGTCAACCACTTCTCGGTCAATCTAGAGTTTT
GAGGGTGCATCCGAATTTGGCTGCCGGACTAGGGGTTTCTTGAAACGGGC
CTTACCCTCGGTGCACCTCGTTCCAGCTTCATTGGGACTTGGGGATACAG
GGAACAAAAAAAAATAAAAAGAAATTCTTGTTTCCAAAAAAAAAAAAAAA
AAAAA
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