CX298242

Overview
NameCX298242
Unique NameCX298242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14677 contig Ccv1_Contig14677:401..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 6.380e-89
Identity = 161/178 (90.45%), Postives = 165/178 (92.70%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRALFY+VMQCLGAICGAGVVKGF   G Y    GGANVVAHGYTKG GLGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  108 GISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQ-PGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.088e-88
Identity = 160/178 (89.89%), Postives = 164/178 (92.13%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRA+FYM+MQCLGAICGAGVVKGF     Y  L GGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  108 GISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPT-PYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.167e-88
Identity = 160/178 (89.89%), Postives = 164/178 (92.13%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRA+FY+VMQCLGAICGAGVVKGF     Y  L GGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHWIFWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  107 GISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQ-PNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFK 283
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.213e-88
Identity = 159/178 (89.33%), Postives = 164/178 (92.13%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRAL+Y+VMQCLGAICGAGVVKGF    QY  L GGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHW+FWVGPF+GA LAALYH VVIRAIPFK
Sbjct:  107 GISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPK-QYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.213e-88
Identity = 159/178 (89.33%), Postives = 164/178 (92.13%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRAL+Y+VMQCLGAICGAGVVKGF    QY  L GGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  WDDHW+FWVGPF+GA LAALYH VVIRAIPFK
Sbjct:  107 GISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPK-QYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.572e-87
Identity = 157/178 (88.20%), Postives = 166/178 (93.26%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRA+FYMVMQ LGAICGAGVVKGF G  ++G L GGAN VA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI++NK  GW+DHWIFWVGPF+GA LAALYHQVVIRAIPFK
Sbjct:  110 GISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFK 287
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 322.013 bits (824), Expect = 2.052e-87
Identity = 158/178 (88.76%), Postives = 164/178 (92.13%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF   G Y    GGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+   WDDHWIFWVGPF+GA LAA+YHQVVIRAIPFK
Sbjct:  109 GISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-KGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFK 285
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.972e-87
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRA+FY+VMQCLGAICGAGVVKGF   G Y    GGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD  W+DHWIFWVGPFVGA LAA+YHQV+IRAIPFK
Sbjct:  110 GISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQ-QGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFK 286
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.019e-86
Identity = 155/178 (87.08%), Postives = 164/178 (92.13%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRA++Y+VMQCLGAICGAGVVKGF    QY  L GGAN +AHGYTKG GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKD  WDDHW+FWVGPF+GA LAALYH +VIRAIPFK
Sbjct:  107 GISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPK-QYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFK 283
[Close]
BLAST of CX298242 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.269e-86
Identity = 154/178 (86.52%), Postives = 165/178 (92.70%), Query Frame = 2 
Query:    5 GISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 538
            GISGGHINPAVT GLFLARKLSLTRALFY++MQCLGA+CGAGVVKGF   G Y    GGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+D  W+DHWIFWVGPF+GA LAA+YHQV+IRAIPFK
Sbjct:  110 GISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQ-QGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 286
The following BLAST results are available for this feature:
BLAST of CX298242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PIP15_ARATH6.380e-8990.45Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH1.088e-8889.89Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH3.167e-8889.89Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_VICFA9.213e-8889.33Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH9.213e-8889.33Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP2_PEA1.572e-8788.20Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_ORYSJ2.052e-8788.76Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_ORYSJ5.972e-8788.20Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ARATH1.019e-8687.08Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP12_MAIZE2.269e-8686.52Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06010B04SK RindPdig24 Citrus clementina cDNA clone C06010B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298242 ID=CX298242; Name=CX298242; organism=Citrus clementina; type=EST; length=733bp
GAGGGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGT
TCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATG
CAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGG
TGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATG
GCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTT
CTTGTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGA
CTCTCATGTTCCTATTTTGGCTCCTCTGCCAATTGGGTTCGCTGTGTTTT
TGGTTCACTTGGCCACTATCCCAATTACCGGAACTGGCATCAACCCAGCG
AGGAGTCTTGGAGCTGCAATCATCTACAACAAGGACCGCGGTTGGGATGA
CCACTGGATTTTCTGGGTGGGACCATTCGTTGGAGCTGGACTCGCAGCTT
TGTACCACCAAGTCGTGATCAGAGCCATTCCCTTCAAATGAAGCTGATCG
CTTCATCAACGTTCGTGATTGCACCTGCATTTGTTTATGGCTGTTGCTGG
TTTGCTTATGTGTATTATAAAATATTAATTAGTCCTTTGTTCAAATCTGC
TGGTGCTGGACCTGGGCCTGCTTCTCTGTTTTCCTTCCTTAAACGTTTTT
TTTTTTTTTTTATTTTGAAGAGAGGTGGATGAT
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