CX298254

Overview
NameCX298254
Unique NameCX298254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig743 contig Ccv1_Contig743:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298254 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:    2 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 262
            L+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  309 LVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
[Close]
BLAST of CX298254 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:    2 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 262
            L+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  309 LVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
[Close]
BLAST of CX298254 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:    2 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 262
            L+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  309 LVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
[Close]
BLAST of CX298254 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:    2 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 262
            L+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  309 LVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
[Close]
BLAST of CX298254 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:    2 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 262
            L+ LM      P NLGNP E T+LE AQ+++  +   + I+F P  +DDP +R+PDI +AK LLGWEP V L +GL K ++ F + +
Sbjct:  307 LVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSREL 393
[Close]
BLAST of CX298254 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 2 
Query:    2 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 262
            L+ LM      P NLGNP E ++++ A+++++ +    +I F    +DDP +RKPDI +AK LLGWEP V L +GL K +  FR+ +
Sbjct:  310 LVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396
The following BLAST results are available for this feature:
BLAST of CX298254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UXS1_RAT1.757e-1645.98UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.757e-1645.98UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.757e-1645.98UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.757e-1645.98UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE5.112e-1644.83UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
UXS1_XENTR1.645e-1441.38UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
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Properties
Property NameValue
Genbank descriptionC06010C04SK RindPdig24 Citrus clementina cDNA clone C06010C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298254 ID=CX298254; Name=CX298254; organism=Citrus clementina; type=EST; length=700bp
TCTGATGCGCCTCATGGAGGGAGAACATGTGGGTCCTTTTAATCTTGGAA
ATCCGGGTGAATTTACCATGCTTGAACTTGCTCAGGTGGTCCAGGAAACA
ATTGACCCAAATGCAAAAATAGAGTTCAGGCCCAACACTGAAGATGATCC
ACACAAGAGGAAGCCTGATATCTCAAGGGCTAAAGAGCTTCTTGGTTGGG
AACCAAAGGTATCATTGAGGAAGGGTCTCCCCAAGATGGTCAAAGATTTC
CGGCAGCGTATCTTTGGTGACCACAAGGAAGGTGGTGCAGGTGCCACCCC
CGACACCACGTCATCGGCGTAACTTGGCCCGTGTACTTCTTAGAGTGATC
AAAGGAACGGGAAATGTTTGGTTGAAAACAATTCCCCCTTTTTCCTCCTC
GAGAACAACATATGGTAGCCACATTCAACAGCAGCAGCGGTAGCAGCAGA
TGAGCCCTTTGTTATCTATATCTGGCTTAGATTTCAAGGTGCCCTGATAT
AAATTCGTTTTCCTATTTTCTTGTAATTTTCTATGTTATCCTGATCCTGA
GTTTGATAGACAGCAAGCATTACCGTTACAATTTATCCAGTTCTTATCTT
CCGATTGTAGTAGAGGAGTTTGTTACTGAAAATAGGCAGTAGACCACATT
TCTTTGTTCCTTTCGTTCTGTTTTTTGATAATGTACTTATTTTTGTTGTT
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