CX298255

Overview
NameCX298255
Unique NameCX298255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig389 contig Ccv1_Contig389:371..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.410e-33
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RY +YD+DFVTAENCQKS+IFFIAWSPDTA+VR KMIYASSKDRFKRELDGIQVELQATDP+EMGLDVFK R N
Sbjct:   64 RYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.264e-32
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYAVYD+DFVTAENCQKSRIFFIAW PDTARVRSKMIYASSKDRFKRELDGIQVELQA DP+EMGLDV + RAN
Sbjct:   66 RYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.803e-32
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYA++DYDFVT ENCQKS+IFFIAWSPDT+RVRSKMIYASSKDRFKRELDGIQVELQATDP+E+GLDV + RAN
Sbjct:   66 RYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.193e-32
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN*IK 245
            RYAVYD+DF+T EN QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EMGLDVF+ RA  I+
Sbjct:   66 RYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRAGGIE 142          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.193e-32
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVF+ RAN
Sbjct:   66 RYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.193e-32
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYAVYDYDF T ENCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K R N
Sbjct:   66 RYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDV K R N
Sbjct:   66 RYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYAVYD+DF T +NCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRE++GIQVELQATDPSEM LD+ K R N
Sbjct:   66 RYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.495e-30
Identity = 60/73 (82.19%), Postives = 69/73 (94.52%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 233
            RYAV+D+DFVT ENCQKS+IFFI+W+PDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   66 RYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 60/73 (82.19%), Postives = 69/73 (94.52%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 233
            RYAV+D+DFVT ENCQKS+IFFI+WSPDT+RVRSKM+YAS+KDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   66 RYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
The following BLAST results are available for this feature:
BLAST of CX298255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ADF2_ARATH7.410e-3387.84Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF1_PETHY1.264e-3290.54Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF7_ORYSJ4.803e-3286.49Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF2_PETHY8.193e-3287.01Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_ARATH8.193e-3286.49Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF10_ARATH8.193e-3286.49Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF4_ARATH4.066e-3185.14Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF8_ARATH3.442e-3081.08Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF1_ORYSJ4.495e-3082.19Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF_LILLO5.871e-3082.19Actin-depolymerizing factor OS=Lilium longiflorum ... [more]

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Properties
Property NameValue
Genbank descriptionC06010C05SK RindPdig24 Citrus clementina cDNA clone C06010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298255 ID=CX298255; Name=CX298255; organism=Citrus clementina; type=EST; length=594bp
GATTCGGCCGAGGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGTGTGGAAGTTA
TGGGATGAGTGGCTACTTATAGCTATTTCGTCAAGCTAAGGTGTTTCAAT
TGATGGGGGATGGATAACCCTCTGTTAGGGTTGTTTTTACTTTGAAAATG
GATGTTTCATTTTGAACTTTATAAATGGATGTTTCATTTTTCTT
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