CX298261

Overview
NameCX298261
Unique NameCX298261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length796
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5981 contig Ccv1_Contig5981:426..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.290e-74
Identity = 135/246 (54.88%), Postives = 179/246 (72.76%), Query Frame = 2
Query:    2 SFMWFGPTPRVNIMNPDQIKAIFTKINDFQKVNSI--PLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGSSYEEGRRIFQLQAELAELTMQVFRSVHIPGWRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAGEAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNWT 733
            SF W G  PR+++M P+ IK + T  + +QK   +  PL + L+ G+ S EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P    LTSDVIS+ AFGS+YEEG +IF+L  EL +LT+   R V+IPGW +LPTKRN+RMKEI+KEI   L  II  R KA++AGE   DDLLG+L+E++ +EI++ GN K+ G S+NDVIEECKLFY AGQETT VLL WT
Sbjct:   99 SFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVISKVAFGSTYEEGGKIFRLLKELMDLTIDCMRDVYIPGWSYLPTKRNKRMKEINKEITDMLRFIINKRMKALKAGEPGEDDLLGVLLESNIQEIQKQGNKKDGGMSINDVIEECKLFYFAGQETTGVLLTWT 344          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4Z2_HUMAN (Putative cytochrome P450 family member 4Z2 OS=Homo sapiens GN=CYP4Z2P PE=5 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 64/271 (23.62%), Postives = 121/271 (44.65%), Query Frame = 2
Query:    8 MWFGP-TPRVNIMNPDQIKAIFTKINDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGSSYEEGRRIFQLQAELAELTMQVFRSVHIPGWR-----------FLPTKRNRRMKEIDKEIRASLMGIIKNREKAMR------AGEAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNWTW----SYEQHQ 754
            +W GP T   NI +PD +K +  + +    V+   L   +  GL +L+G KW KHR+++ P F+   LK+ +     S   ++ KWE+   +  +S L+++ +++ +T D I + AF       +   QL + L      VF    I   R           F  + + +   + ++E+      +I++R+++++        +    D L IL+       ++        FS  D+  E K F  AG +TT+  ++W +     Y +HQ
Sbjct:   82 LWVGPFTMFFNIHDPDYVKILLKRQDPKSAVSHKILESWVGRGLVTLDGSKWKKHRQIVKPGFNISILKIFITMMSKSVRMMLNKWEEH--IAQNSRLELFQHVSLMTLDSIMKCAFSH-----QGSIQLDSTLDSYLKAVFNLSKISNQRMNNFLHHNDLVFKFSSQGQIFSKFNQELHQFTEKVIQDRKESLKDKLKQDTTQKRRQDFLDILLSAKSENTKD--------FSEADLQAEVKTFMFAGHDTTTTAISWIFYCLAKYPEHQ 337          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4C1_BLADI (Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP4C1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 71/256 (27.73%), Postives = 112/256 (43.75%), Query Frame = 2
Query:    8 MWFGPTPRVNIMNPDQIKAIF--TKINDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFG----SSYEEGRRIFQLQAELAELTMQVFRSVH---IPGWRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAG------EAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNW 730
            +W GP  +V +  P+ ++ I   TK  D   V S  +   L  GL +  G KW  HRK+I P FH + L + +  F +  +EI+ K  K  S  G  + D++P++ +   D+I  TA G    +  E      +   E++ELTMQ  RSV     P   F  T   +R  E  + +      +I+ R+   +            D+LLG     +F ++    +      S  D+ EE   F   G +TTS  + W
Sbjct:   76 IWAGPIAQVGLTRPEHVELILRDTKHIDKSLVYSF-IRPWLGEGLLTGTGAKWHSHRKMITPTFHFKILDIFVDVF-VEKSEILVK--KLQSKVGGKDFDIYPFITHCALDIICETAMGIQMNAQEESESEYVKAVYEISELTMQ--RSVRPWLHPKVIFDLTTMGKRYAECLRILHGFTNKVIQERKSLRQMTGMKPTISNEEDELLGKKKRLAFLDLLLEASENGTKMSDTDIREEVDTFMFEGHDTTSAGICW 325          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4X1_HUMAN (Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 64/257 (24.90%), Postives = 124/257 (48.25%), Query Frame = 2
Query:   11 WFGPTPRVN-IMNPDQIKAIFTKINDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAF--------GSSYEE-GRRIFQLQAELAELTMQVFRSVHIPGWRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAGEAAND-------DLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNW 730
            W GP      I +PD  K + ++ +   +        LL  GLA+L+G KW +HR+L+ P FH   LK  +     S   ++ KWEK  S + +S ++V+ ++ +++ D+I + AF         S+++   + IF+L   +     +++  ++     F  + +  R +++ + +      II+ R+K+++AG   ++       D L I++       +E G++    FS  DV  E   F LAG +T +  ++W
Sbjct:   83 WIGPFQAFFCIYDPDYAKTLLSRTDPKSQYLQKFSPPLLGKGLAALDGPKWFQHRRLLTPGFHFNILKAYIEVMAHSVKMMLDKWEKICSTQDTS-VEVYEHINSMSLDIIMKCAFSKETNCQTNSTHDPYAKAIFELSKIIFH---RLYSLLYHSDIIFKLSPQGYRFQKLSRVLNQYTDTIIQERKKSLQAGVKQDNTPKRKYQDFLDIVLSAK----DESGSS----FSDIDVHSEVSTFLLAGHDTLAASISW 327          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.558e-13
Identity = 68/257 (26.46%), Postives = 117/257 (45.53%), Query Frame = 2
Query:   11 WFGP-TPRVNIMNPDQIKAIFTK---INDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRT--AFGSSYEEG-----RRIFQLQAELAELTMQVFRSVHIPGWRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAGEAANDDLLGILMETSFRE------IEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNW 730
            W GP TP +N+ +PD ++++      I D   V    L   L  GL    G+KW  HR+L+ PAFH   LK  +  F  S   +  KW++ +++EGS+ LDV+ +++ +T D + +   +F S+ +E        I +L A + +   Q FR      + +  T   RR     + +      +I+ R + + +     DD L    ++   +      + E  N K +  S  D+  E   F   G +TT+  L+W
Sbjct:   91 WLGPITPIINLCHPDIVRSVINTSDAITDKDIVFYKTLKPWLGDGLLLSVGDKWRHHRRLLTPAFHFNILKPYIKIFSKSANIMHAKWQR-LAMEGSTCLDVFEHISLMTLDSLQKCIFSFDSNCQEKPSEYITAIMELSALVVKRNNQFFR---YKDFLYFLTPCGRRFHRACRLVHDFTDAVIQERRRTLTS--QGVDDFLQAKAKSKTLDFIDVLLLSEDKNGKEL--SDEDIRAEADTFMFGGHDTTASGLSW 339          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4Z1_HUMAN (Cytochrome P450 4Z1 OS=Homo sapiens GN=CYP4Z1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.565e-13
Identity = 65/279 (23.30%), Postives = 123/279 (44.09%), Query Frame = 2
Query:    8 MWFGP-TPRVNIMNPDQIKAIFTKINDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGSSYEEGRRIFQLQAELAELTMQVFRSVHIPGWR-----------FLPTKRNRRMKEIDKEIRASLMGIIKNREKAMR------AGEAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNWTW----SYEQHQIGKTCKAE 778
            +W GP T   ++ +PD  K +  + +    V+   L   +  GL +L+G KW KHR+++ P F+   LK+ +     S   ++ KWE+   +  +S L+++ +++ +T D I + AF       +   QL + L      VF    I   R           F  + + +   + ++E+      +I++R+++++        +    D L IL+       ++        FS  D+  E K F  AG +TTS  ++W       Y +HQ  + C+ E
Sbjct:   82 LWVGPFTMFFSVHDPDYAKILLKRQDPKSAVSHKILESWVGRGLVTLDGSKWKKHRQIVKPGFNISILKIFITMMSESVRMMLNKWEEH--IAQNSRLELFQHVSLMTLDSIMKCAFSH-----QGSIQLDSTLDSYLKAVFNLSKISNQRMNNFLHHNDLVFKFSSQGQIFSKFNQELHQFTEKVIQDRKESLKDKLKQDTTQKRRWDFLDILLSAKSENTKD--------FSEADLQAEVKTFMFAGHDTTSSAISWILYCLAKYPEHQ--QRCRDE 343          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4V2_HUMAN (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 60/258 (23.26%), Postives = 101/258 (39.15%), Query Frame = 2
Query:    8 MWFGPTPRVNIMNPDQIKAIFTKINDFQKVNSIP-LARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGSSY-EEGRRIFQLQAELAELTMQVFRSVHIPG-----WRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAGEAANDDLLG---------ILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNWT 733
            +W GP P V + N + ++ I T      K +    L   L +GL +  G KW   RK++ P FH   L+  L         ++ K EK ++ E     + + Y+     D+I  TA G +   +     +    +  ++  +FR + +P      W +L  K     K+  K +      +I  R   M A E    D  G           ++      ++ GN      S  D+ EE   F   G +TT+  +NW+
Sbjct:   92 LWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHINQEA---FNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLW-YLMFKEGWEHKKSLKILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNR----LSHEDIREEVDTFMFEGHDTTAAAINWS 341          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4X1_RAT (Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 63/253 (24.90%), Postives = 116/253 (45.85%), Query Frame = 2
Query:   11 WFGPTPRV-NIMNPDQIKAIFTKINDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFG--------SSYEEGRRIFQLQAELAE-LTMQVFRSVHIPGWRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAGEAANDDLLGILMETSFREI---EEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNW 730
            W GP      I +PD  K   ++ +   +     +   L  GL +L+G +W +HR L+ PAFHQ+ LK  +     S   ++ KWEK  + +  + ++V+ ++  +T D+I + AFG         +YE      +   EL E ++ +++   H     F  + +    +E+ K I      II++R+K ++  +  N D        +F +I    + G+ K   FS  D+  E   F  AG + ++  ++W
Sbjct:   83 WVGPFQAFFYIYDPDYAKIFLSRTDPKTQYLHQLMTPFLGRGLLNLDGPRWFQHRCLLTPAFHQDILKPCVDMMAHSVNMMLDKWEKTWTTQ-ETTIEVFEHINLMTLDIIMKCAFGQETNCQINGTYES---YVKATFELGEIISSRLYNFWHHHDIIFKLSPKGHCFQELGKVIHQCTEKIIQDRKKTLK--DQVNQD--DTQTSQNFLDIVLSAQAGDEK--AFSDADLRSEVNTFMWAGHDASAASISW 325          
BLAST of CX298261 vs. ExPASy Swiss-Prot
Match: CP4V2_PONAB (Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 58/258 (22.48%), Postives = 104/258 (40.31%), Query Frame = 2
Query:    8 MWFGPTPRVNIMNPDQIKAIFTKINDFQKVNSIP-LARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGSSY-EEGRRIFQLQAELAELTMQVFRSVHIPGWRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAGEA-ANDDLLGI-------------LMETSFREIEEHGNNKNVGFSMNDVIEECKLFYLAGQETTSVLLNWT 733
            +W GP P V + N + ++ I T      K +    L   L +GL +  G KW   RK++ P FH   L+  L         ++ K EK ++ E     + + Y+     D+I  TA G +   +     +    +  ++  +F+ + +P W +L        +  + E    ++    N   A RA E  A++D  G+              ++      ++ GN      S  D+ EE   F   G +TT+  +NW+
Sbjct:   92 LWVGPVPMVALYNAENVEVILTSSRQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHVNQEA---FNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSQMIFQRIKMP-WLWLDLWYLMFKEGWEHEKGLKILHTFTNNVIAERANEMNADEDCRGVGRGSAPSKNKRRAFLDLLLSVTDDEGNR----LSHEDIREEVDTFMFEGHDTTAAAINWS 341          
The following BLAST results are available for this feature:
BLAST of CX298261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
C72A1_CATRO2.290e-7454.88Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4Z2_HUMAN1.195e-1423.62Putative cytochrome P450 family member 4Z2 OS=Homo... [more]
CP4C1_BLADI1.561e-1427.73Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP... [more]
CP4X1_HUMAN1.726e-1324.90Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2... [more]
CP4F8_HUMAN6.558e-1326.46Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
CP4Z1_HUMAN8.565e-1323.30Cytochrome P450 4Z1 OS=Homo sapiens GN=CYP4Z1 PE=2... [more]
CP4V2_HUMAN9.469e-1223.26Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
CP4X1_RAT2.755e-1124.90Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1... [more]
CP4V2_PONAB8.016e-1122.48Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2... [more]
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Properties
Property NameValue
Genbank descriptionC06010C11SK RindPdig24 Citrus clementina cDNA clone C06010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298261 ID=CX298261; Name=CX298261; organism=Citrus clementina; type=EST; length=796bp
TTCTTTCATGTGGTTTGGTCCGACACCAAGGGTGAATATTATGAATCCTG
ATCAAATAAAAGCGATATTTACCAAGATCAATGATTTTCAAAAAGTCAAT
TCAATCCCACTTGCCAGGCTGCTGATAGTTGGATTGGCTAGCCTTGAGGG
GGAGAAGTGGGCTAAACATAGAAAACTCATCAACCCAGCCTTCCACCAAG
AGAAGCTCAAGCTTATGTTGCCAGCATTCTACTTGAGTTGTACCGAAATA
ATTACAAAGTGGGAGAAGCAAATGTCTGTAGAAGGATCATCTGAGTTGGA
TGTATGGCCTTATCTTGCAAATTTAACAAGTGATGTGATTTCTCGAACGG
CTTTTGGGAGTAGTTATGAAGAAGGAAGAAGGATTTTTCAGCTCCAGGCA
GAGCTAGCTGAACTCACAATGCAAGTCTTTCGTTCAGTTCACATTCCAGG
ATGGAGGTTTTTACCTACAAAGAGAAATAGGAGAATGAAAGAAATTGACA
AGGAAATCCGGGCTTCATTGATGGGAATCATCAAAAATAGGGAGAAGGCA
ATGAGAGCAGGGGAAGCTGCGAATGATGACTTGTTAGGCATACTGATGGA
AACCAGTTTTAGAGAGATTGAAGAACATGGAAATAACAAAAATGTTGGGT
TCAGCATGAACGATGTGATCGAAGAGTGTAAGCTATTTTACCTTGCCGGC
CAAGAGACTACCTCTGTTTTGCTTAATTGGACATGGTCTTATGAGCAGCA
TCAGATTGGCAAGACGTGCAAGGCAGAGTTTTGCAGTGTTTGGCAT
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