CX298264

Overview
NameCX298264
Unique NameCX298264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.533e-39
Identity = 72/95 (75.79%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGLSKAGKFP+PVSHA+D+  K+T+VKSTIKFQLKKVLCLGVA+G+VEM +E L+AN+MLA+N+LVSLLKKGWQN+GSLV+K++M  PHR+Y
Sbjct:  122 LLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.901e-38
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGLSKAGKFPTPVSH++D+  K+ +VKSTIKFQLKKVLC+GVA+GNV M +E LV N+MLAINYLVSLLKKGWQNVGSL IKA+MSPP R+Y
Sbjct:  123 LLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.177e-36
Identity = 70/95 (73.68%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGLSKAGKFP+PVSH++D+  K+ +VKSTIKFQLKKVLCLGVA+G+V+M +E L ANL LAIN+LVSLLKKGWQN+GSLVIK++M  P+R+Y
Sbjct:  122 LLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.710e-34
Identity = 67/95 (70.53%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGP LSKAGKFPTPVSH +D+  KVTDV+STIKFQLKKVLCL VA+GNVEME++ LV  +++++N+ VSLLKK WQNVGSLV+K+SM P  R+Y
Sbjct:  123 LLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.710e-34
Identity = 67/95 (70.53%), Postives = 84/95 (88.42%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGP LSKAGKFPTPVSH +D+ +KVTDV+STIKFQLKKVLCL VA+GNVEM+++ LV  +++++N+LVSLLKK WQNVGSLVIK++M P  R+Y
Sbjct:  123 LLGPQLSKAGKFPTPVSHNDDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.846e-34
Identity = 67/95 (70.53%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGP LSKAGKFPTPVSH +D+  KVTDV+STIKFQLKKVLCL VA+GNVEM+++ LV  +++++N+LVSLLKK WQNVGSLVIK++M P  R+Y
Sbjct:  123 LLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.841e-33
Identity = 68/95 (71.58%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLG  LSKAG+FPTPVSH +D+ +KVTDVKSTIKFQLKKVLCL VA+GNV+ME++ LV  +M+A N+LVSLLKK WQNVGSLVIK++M P  R+Y
Sbjct:  123 LLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.736e-32
Identity = 60/95 (63.16%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGL+K GKFPT ++H+EDMA+K+ DVKST+KFQLKKVLCL VA+G++E+ +  +  N++ +IN+LVSLLKKGWQN+ +L +K SM P HRVY
Sbjct:  123 LLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.250e-30
Identity = 58/95 (61.05%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGL+KAGKFPT VSH E + AKV + K+T+KFQLKKVLC+GVA+GN+ ME++ L  N+ +++N+LVSLLKK WQNV  L +K++M PP R++
Sbjct:  122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.544e-30
Identity = 60/95 (63.16%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+P++H E+M AKV +VKSTIKFQ+K+VLCL VA+G+V+M  + LV N+ LA+N+LVSLLKK WQNV +L IK++M  P R+Y
Sbjct:  123 ILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
The following BLAST results are available for this feature:
BLAST of CX298264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL1B_SCHPO8.533e-3975.7960S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]
RL10A_NEUCR1.901e-3878.9560S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL1A_SCHPO5.177e-3673.6860S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]
RL1_YEAST3.710e-3470.5360S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL10A_ASHGO3.710e-3470.5360S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL10A_CANGA4.846e-3470.5360S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL10A_CANAL1.841e-3371.5860S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL10A_DICDI7.736e-3263.1660S ribosomal protein L10a OS=Dictyostelium discoi... [more]
R10A2_ARATH3.250e-3061.0560S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_MACFA5.544e-3063.1660S ribosomal protein L10a OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionC06010D02SK RindPdig24 Citrus clementina cDNA clone C06010D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298264 ID=CX298264; Name=CX298264; organism=Citrus clementina; type=EST; length=409bp
GAGGGTCTCCTCGGTCCCGGTCTCTCCAAGGCCGGAAAGTTCCCTACCCC
CGTCTCCCACGCTGAGGACATGGCCGCCAAGGTCACCGACGTCAAGTCCA
CCATCAAGTTCCAGCTCAAGAAGGTTCTGTGCCTCGGTGTTGCTATCGGC
AACGTCGAGATGGAGAAGGAGGCTCTTGTTGCCAACCTGATGCTCGCCAT
CAACTACCTCGTCTCCCTCCTCAAGAAGGGCTGGCAGAACGTTGGCAGTC
TTGTCATCAAGGCTTCCATGTCTCCCCCCCACCGTGTCTACTAGATTATC
TGTCGCTTAACTGCGCCGGTGAGATCTATTTTGGGCCTGAGAACTGGGTT
TATGTCACAGTCTCACGACTGAAAAAAAATATGAAGCTCATGAAAAAAAA
AAAAAAAAA
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