CX298268

Overview
NameCX298268
Unique NameCX298268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length323
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig855 contig Ccv1_Contig855:393..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 179
            EKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct:  102 EKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.862e-25
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 179
            EKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct:  102 EKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.576e-24
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 176
            EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct:  102 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 179
            EKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:  102 EKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.022e-23
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 179
            EKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:  102 EKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.973e-23
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 179
            EKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:  102 EKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.880e-18
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFT 173
            EKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+
Sbjct:  101 EKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFS 155          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS11_DICDI (40S ribosomal protein S11 OS=Dictyostelium discoideum GN=rps11 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.639e-15
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 170
            EKRHSNIPAH+SP F VKEGD V IGQCRPLSKTVRFNV+K   + +S    KAF
Sbjct:  101 EKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF 155          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS11_YEAST (40S ribosomal protein S11 OS=Saccharomyces cerevisiae GN=RPS11A PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.136e-13
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 170
            EKRH N+P H+SP FRV+ GD V +GQCRP+SKTVRFNV+KV  + ++G A K F
Sbjct:  101 EKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQF 153          
BLAST of CX298268 vs. ExPASy Swiss-Prot
Match: RS11_SCHPO (40S ribosomal protein S11 OS=Schizosaccharomyces pombe GN=rps11a PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.758e-13
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 3
Query:    6 EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 134
            EKRH N+ AH+SP FR+ EGD V +GQCRPLSKTVRFNVL+V+
Sbjct:   98 EKRHKNLAAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRVV 140          
The following BLAST results are available for this feature:
BLAST of CX298268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS11_EUPES1.290e-2694.8340S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN1.862e-2594.8340S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE1.576e-2491.2340S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH4.587e-2487.9340S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH1.022e-2388.1440S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH2.973e-2387.9340S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE2.880e-1875.4440S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_DICDI6.639e-1570.9140S ribosomal protein S11 OS=Dictyostelium discoid... [more]
RS11_YEAST2.136e-1361.8240S ribosomal protein S11 OS=Saccharomyces cerevis... [more]
RS11_SCHPO4.758e-1372.0940S ribosomal protein S11 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC06010D06SK RindPdig24 Citrus clementina cDNA clone C06010D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298268 ID=CX298268; Name=CX298268; organism=Citrus clementina; type=EST; length=323bp
AGGATGAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTC
CGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTTGTC
AAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTTCTG
GTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCGGCTGTTTC
CAACATTAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTATTTGGAT
TTTTGCATTGGGAATTAAATCCTGTTATGTCCTAATATATATTTTCTAGA
GAAGTTAAAAAAAAAAAAAAAAA
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