CX298271

Overview
NameCX298271
Unique NameCX298271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11390 contig Ccv1_Contig11390:51..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX298271 vs. ExPASy Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.064e-51
Identity = 106/201 (52.74%), Postives = 130/201 (64.68%), Query Frame = 1 
Query:  127 AAAPASRGPIEANDKDLIQVALNXXXXXXXXXXNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKMTVAEFH*RIS 729
            AA    +  I  +D  L++  LN            A G+G+D +EPE+A GGP P G  KANL      II +F YQE GH+RAI ++V GF RP +DLS ++FA + D A G  L PPFDPY+N +NYLLA YV+PYVGL GYVG  P L +  SR LVAGLL VE+GQDA+IR LLYERA   V PY +TVAEF  +IS
Sbjct:   26 AAWHHEKDDIPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKIS 226
The following BLAST results are available for this feature:
BLAST of CX298271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRPE_CRAPL1.064e-5152.74Desiccation-related protein PCC13-62 OS=Craterosti... [more]
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Properties
Property NameValue
Genbank descriptionC06010D09SK RindPdig24 Citrus clementina cDNA clone C06010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298271 ID=CX298271; Name=CX298271; organism=Citrus clementina; type=EST; length=734bp
ATAGTTTATTAGCTGGTTTTGTTTATGAATTGCCCATAAAAAAAAAAAAT
GGCAACTCGATACTATTCTTTCGTTGTAGCTTTGCATCTTACATTAATGA
ATATTCTTTTTGGCATGGTCGTCGGTGCTGCAGCTCCAGCTTCCCGCGGA
CCAATCGAAGCCAACGATAAGGATCTTATTCAAGTAGCTCTGAATTTGGA
GTTCTTAGAAACTGAATTCTTCTTAAATGGTGCACTCGGCAGAGGACTTG
ACAGTATAGAGCCAGAGATGGCAGCGGGTGGTCCTCCTCCGACTGGCGCC
AGCAAGGCCAACCTTGACCATACTACATATCGGATCATTGAGGAATTCGG
TTATCAGGAGATTGGTCATCTCAGGGCTATCGTAACAACAGTTGGTGGAT
TTGCAAGGCCTCAGATAGATCTCAGCCGTCAAAATTTCGCCAATATATTT
GACCAAGCAGTTGGTTACAAACTCACTCCTCCATTCGACCCTTATTCCAA
CACTGTCAATTATCTCTTAGCAAGCTATGTCATCCCTTATGTGGGACTCG
TCGGTTATGTTGGCACCATTCCCAACCTTGTCAACTGCACTTCTCGTAGT
TTAGTTGCAGGGCTCTTAGGAGTGGAGTCTGGACAAGATGCAGTAATACG
GACGTTACTATACGAGAGGGCTGACCAGATTGTGGTTCCTTATAAGATGA
CAGTAGCTGAATTTCACTGACGTATCTCCGCCCT
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