CX298276

Overview
NameCX298276
Unique NameCX298276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1_SOLLC (Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.037e-20
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRGFKETGFLNEVAEVV+TGVTPAEKLL++YHGKW +SVDP+FEELLY
Sbjct:  473 GLERRGFKETGFLNEVAEVVKTGVTPAEKLLELYHGKWGQSVDPIFEELLY 523          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1_TOBAC (Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.939e-20
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRG+KETGFLNEV EVVRTGVTPAEKLL++YHGKW  SVDPVFEELLY
Sbjct:  472 GLERRGYKETGFLNEVTEVVRTGVTPAEKLLELYHGKWGRSVDPVFEELLY 522          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1_MEDTR (Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRGFKE+GFLN VAEVVRTGVTPAE+LL++YHGKW +SVD VF+ELLY
Sbjct:  458 GLERRGFKESGFLNAVAEVVRTGVTPAERLLELYHGKWEQSVDHVFDELLY 508          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1_ARATH (Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRG+KE GFLN V EVVRTGVTPAEKLL+MY+G+W +SVDPVFEELLY
Sbjct:  472 GLERRGYKEAGFLNAVDEVVRTGVTPAEKLLEMYNGEWGQSVDPVFEELLY 522          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1_BRAJU (Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRG+KE GFLN V EVVRTGVTPAE LL+MY+G+W +SVDPVF+ELLY
Sbjct:  464 GLERRGYKEVGFLNAVTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 514          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSJ (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRG+KE GFL EV  V+ +GVTPAE+LL++Y  KW+ SVDPVF+ELLY
Sbjct:  446 GLERRGYKEVGFLREVDAVISSGVTPAERLLNLYETKWQRSVDPVFQELLY 496          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSJ (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRG+KE GFL EV  V+ +GVTPAE+LL++Y  KW+ SVDPVF+ELLY
Sbjct:  442 GLERRGYKEVGFLREVDAVISSGVTPAERLLNLYETKWQRSVDPVFQELLY 492          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSI (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRG+KE GFL EV  V+ +GVTPAE+LL++Y  KW+ SVDPVF+ELLY
Sbjct:  442 GLERRGYKEVGFLREVDAVISSGVTPAERLLNLYETKWQRSVDPVFQELLY 492          
BLAST of CX298276 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSI (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-2 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 GLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 154
            GLERRG+KE  FL EV  V+ +GVTPAE+LL++Y  KW+ SVDPVF+ELLY
Sbjct:  446 GLERRGYKEVSFLREVDAVISSGVTPAERLLNLYETKWQRSVDPVFQELLY 496          
The following BLAST results are available for this feature:
BLAST of CX298276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GSH1_SOLLC1.037e-2088.24Glutamate--cysteine ligase, chloroplastic OS=Solan... [more]
GSH1_TOBAC3.939e-2088.24Glutamate--cysteine ligase, chloroplastic OS=Nicot... [more]
GSH1_MEDTR1.655e-1882.35Glutamate--cysteine ligase, chloroplastic OS=Medic... [more]
GSH1_ARATH6.289e-1882.35Glutamate--cysteine ligase, chloroplastic OS=Arabi... [more]
GSH1_BRAJU3.121e-1778.43Glutamate--cysteine ligase, chloroplastic OS=Brass... [more]
GSH1B_ORYSJ2.473e-1468.63Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
GSH1A_ORYSJ2.473e-1468.63Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1A_ORYSI2.473e-1468.63Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1B_ORYSI1.227e-1366.67Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionC06010E02SK RindPdig24 Citrus clementina cDNA clone C06010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298276 ID=CX298276; Name=CX298276; organism=Citrus clementina; type=EST; length=572bp
TGGTTTGGAACGGAGAGGCTTCAAAGAGACAGGGTTCTTGAATGAGGTGG
CTGAGGTAGTCAGAACAGGGGTGACACCGGCGGAAAAACTATTGGACATG
TATCATGGGAAGTGGCGAGAGTCAGTAGATCCTGTTTTTGAGGAGCTACT
TTATTAAGATGAGCCGTTTGTGTATGCATGCTTGTGGACTCTGGTAGATT
GATTGAGACTAAAATCATCCAAACGTAAAGCACTAAAGCATACTTGGGAC
ATTGGATTCCAACAAGTAGCTGGCTGGAGGGGCCAAAACAATACTCAATG
CTCGTATGGTCATGGAGGACAGACTGACACTCAATAATATGAATCTTCCT
GCTGAGCCAACTAATCTGATTCATAAACTATACATGCAATCTTTTATTGA
TTTAGGTGCTGTAACCACCTGATCTGCATCGACATGTCCAAATTATCCTT
TTAATGTCTTATTATCTAAATTGATCATGGTTTACTAACTTGTCCAAAGA
AAGTATCAAATAACACGCAGCTTTTACTTATCTTAGGCATCATAAACTAA
TCGTATTGAACAAAAAAAAAAA
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