CX298280

Overview
NameCX298280
Unique NameCX298280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX298280 vs. ExPASy Swiss-Prot
Match: COX5C_ORYSJ (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   16 KIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 168
            +IAHATLKGPSVVKEIC            WKM+ WN QRK+R FYD+LEKG
Sbjct:    5 RIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKG 55
[Close]
BLAST of CX298280 vs. ExPASy Swiss-Prot
Match: CX5C3_ARATH (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   16 KIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 168
            KIAHATLKGPSVVKE+             WKM+ WN QRK+RVFYDLLE+G
Sbjct:    5 KIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERG 55
[Close]
BLAST of CX298280 vs. ExPASy Swiss-Prot
Match: CX5C2_ARATH (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   16 KIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 168
            K+AHATLKGPSVVKE+             WKM+ WN QRK+R FYDLLE+G
Sbjct:    5 KVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55
The following BLAST results are available for this feature:
BLAST of CX298280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
COX5C_ORYSJ8.516e-1262.75Cytochrome c oxidase subunit 5C OS=Oryza sativa su... [more]
CX5C3_ARATH2.478e-1162.75Probable cytochrome c oxidase subunit 5C-3 OS=Arab... [more]
CX5C2_ARATH9.416e-1158.82Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC06010E06SK RindPdig24 Citrus clementina cDNA clone C06010E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298280 ID=CX298280; Name=CX298280; organism=Citrus clementina; type=EST; length=644bp
GGCCGAGGCTGGCCTAAGATTGCTCATGCCACCTTGAAAGGTCCAAGCGT
TGTCAAGGAGATATGTTTAGGAATTACACTGGGGCTGGCTGCTGGTGGTC
TTTGGAAGATGAATCAGTGGAATAATCAAAGAAAGTCAAGGGTATTTTAT
GACTTGCTAGAGAAAGGTGAAGTTAGCGTTGTTGTAGAAGAATAAAGTGT
TTACGTTATCACGGTGATGATGTGGATGGCTTCAATGGTACTCTGATAAT
TTGGATTCTCCTTATTTGGCGCCTAGATCTCACATGATCTTCCATAGTTT
GGGTTTTCAACAAATAAATTTTCTTTTCTGAGACTTGACTGATTGTTGGT
TATGAAATTGTAAAGATTCTTGGTTCTCTTCATCAAGCATTATCTGTCTT
GTTTACTTTATTTGAGATGTTCTTAGTTTGTCACCTGTTATGTTTGTGAA
TGACAAATTTGCACGTCTGGAACAAGAAATACATTCTTTTGAGTGCAACA
AGCTTAACTCCATTGAGTTAGTTGTTCACTTTGTAGTCTCTTGCTCTATG
GGTTTAGCGGTGAAGGCACAGGCAGGCAATTTGAATGTTATAGACAGCTC
AGGAAATATCCTGATAGTTAGGCCAAAAAAAAAAAAAAAAAAAA
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