CX298287
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_ARATH (Frataxin homolog OS=Arabidopsis thaliana GN=FH PE=2 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 5.776e-46 Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 2 Query: 41 QAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRRTKANXXXXXXXXXXXXCGEPINLS 409 Q P ++DY S+LQE+EFH+LAN TI+ L EK E+YGD +QIDGFD+DYGNEVLTLKLG+LGTYVLNKQTPNRQIW+SSPVSGPSRFDWD A W+YRRT+A CGEPI LS Sbjct: 65 QGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQIDGFDIDYGNEVLTLKLGSLGTYVLNKQTPNRQIWMSSPVSGPSRFDWDRDANAWIYRRTEAKLHKLLEEELENLCGEPIQLS 187
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_MOUSE (Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19 Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 2 Query: 56 IDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331 +D S L E + RLA T+ L E FE+ D ++ +DV +G+ VLT+KLG LGTYV+NKQTPN+QIWLSSP SGP R+DW TG + WVY Sbjct: 81 LDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYTLEDYDVSFGDGVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDW-TG-KNWVY 172
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_HUMAN (Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.341e-18 Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 74 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331 L E + RLA T+ L E FE+ D + +DV +G+ VLT+KLG LGTYV+NKQTPN+QIWLSSP SGP R+DW TG + WVY Sbjct: 90 LDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDW-TG-KNWVY 175
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_BOVIN (Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.987e-18 Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 74 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331 L + + RLA T+ L E FE+ D + +DV +G+ VLT+KLG LGTYV+NKQTPN+QIWLSSP SGP R+DW TG + WVY Sbjct: 91 LDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDW-TG-RNWVY 176
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_MACFA (Frataxin, mitochondrial OS=Macaca fascicularis GN=FXN PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17 Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2 Query: 74 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331 L + + RLA T+ L E FE+ D + +DV +G+ VLT+KLG LGTYV+NKQTPN+QIWLSSP SGP R+D TG + WVY Sbjct: 90 LDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYD-RTG-KNWVY 175
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_SCHPO (Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC1183.03c PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16 Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2 Query: 5 FSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRRTKANXXXXXXXXXXXXCGEPINLSSS 415 FS+ GL + + + + L + E+HR+A+ T+ L + FE+ + + +D+ Y N V+TL LG GTYV+NKQ P QIWLSSPVSGP +++ ++ W R + PI S Sbjct: 21 FSTNVFGLRCRYYSQ--VRHNGALTDLEYHRVADDTLDVLNDTFEDLLEEVGKKDYDIQYANGVITLMLGEKGTYVINKQPPAHQIWLSSPVSGPKHYEYSLKSKTWCSTRDEGTLLGILSSEFSKWFSRPIEFKKS 155
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_DICDI (Frataxin, mitochondrial OS=Dictyostelium discoideum GN=fxn PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.273e-15 Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 2 Query: 116 HDL-QEKFEEYGDTIQI-------DGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRR 337 HD+ E+FE + D ++I +GF+V+ + VLT+ +G GTYV+NKQTPNRQIW SSP+SGP RFD+D+ + WV R Sbjct: 89 HDIVDEEFELFVDRLEILSEANTCEGFEVEGNDGVLTIIVGNKGTYVINKQTPNRQIWWSSPLSGPKRFDYDSVEKRWVDNR 170
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_DROME (Frataxin homolog, mitochondrial OS=Drosophila melanogaster GN=fh PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14 Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 56 IDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTI-QIDGFDVDYGNEVLTLKLGAL-GTYVLNKQTPNRQIWLSSPVSGPSRFDW--DTGAQGWVYRRT 340 I+ S L + R+ + T+ L + FEE + ++ G DV Y + VLT+ LG GTYV+N+QTPN+QIWLSSP SGP R+D+ A W+Y+ + Sbjct: 62 IETESTLDGATYERVCSDTLDALCDYFEELTENASELQGTDVAYSDGVLTVNLGGQHGTYVINRQTPNKQIWLSSPTSGPKRYDFVGTVAAGRWIYKHS 160
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_CAEEL (Frataxin homolog OS=Caenorhabditis elegans GN=frh-1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.696e-13 Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 2 Query: 71 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQI-DGFDVDYGNEVLTLKLG-ALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331 + ++E+ A+ST+ L + F++ D+ + + FDV + VLT+ + ++GTYV+NKQ+PN+QIWLSSP+SGP R+D + + W Y Sbjct: 19 IFSQNEYETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQSPNKQIWLSSPMSGPKRYDLEEEGK-WTY 106
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_YEAST (Frataxin homolog, mitochondrial OS=Saccharomyces cerevisiae GN=YFH1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.216e-11 Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 2 Query: 83 DEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRR 337 +++H A+ + L + EE + DV+ + V+TL++ A GTYV+NKQ PN+QIWL+SP+SGP+RFD G WV R Sbjct: 71 EKYHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFGTYVINKQPPNKQIWLASPLSGPNRFDLLNGE--WVSLR 153 The following BLAST results are available for this feature:
BLAST of CX298287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX298287 ID=CX298287; Name=CX298287; organism=Citrus clementina; type=EST; length=591bpback to top |