CX298287

Overview
NameCX298287
Unique NameCX298287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_ARATH (Frataxin homolog OS=Arabidopsis thaliana GN=FH PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.776e-46
Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 2
Query:   41 QAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRRTKANXXXXXXXXXXXXCGEPINLS 409
            Q P ++DY S+LQE+EFH+LAN TI+ L EK E+YGD +QIDGFD+DYGNEVLTLKLG+LGTYVLNKQTPNRQIW+SSPVSGPSRFDWD  A  W+YRRT+A             CGEPI LS
Sbjct:   65 QGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQIDGFDIDYGNEVLTLKLGSLGTYVLNKQTPNRQIWMSSPVSGPSRFDWDRDANAWIYRRTEAKLHKLLEEELENLCGEPIQLS 187          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_MOUSE (Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 2
Query:   56 IDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331
            +D  S L E  + RLA  T+  L E FE+  D    ++ +DV +G+ VLT+KLG  LGTYV+NKQTPN+QIWLSSP SGP R+DW TG + WVY
Sbjct:   81 LDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYTLEDYDVSFGDGVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDW-TG-KNWVY 172          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_HUMAN (Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.341e-18
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = 2
Query:   74 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331
            L E  + RLA  T+  L E FE+  D     + +DV +G+ VLT+KLG  LGTYV+NKQTPN+QIWLSSP SGP R+DW TG + WVY
Sbjct:   90 LDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDW-TG-KNWVY 175          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_BOVIN (Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.987e-18
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 2
Query:   74 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331
            L +  + RLA  T+  L E FE+  D     + +DV +G+ VLT+KLG  LGTYV+NKQTPN+QIWLSSP SGP R+DW TG + WVY
Sbjct:   91 LDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDW-TG-RNWVY 176          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_MACFA (Frataxin, mitochondrial OS=Macaca fascicularis GN=FXN PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   74 LQEDEFHRLANSTIHDLQEKFEEYGDT-IQIDGFDVDYGNEVLTLKLGA-LGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331
            L +  + RLA  T+  L E FE+  D     + +DV +G+ VLT+KLG  LGTYV+NKQTPN+QIWLSSP SGP R+D  TG + WVY
Sbjct:   90 LDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYD-RTG-KNWVY 175          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_SCHPO (Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC1183.03c PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:    5 FSSRPSGLDSDFQAPEAIDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRRTKANXXXXXXXXXXXXCGEPINLSSS 415
            FS+   GL   + +   + +   L + E+HR+A+ T+  L + FE+  + +    +D+ Y N V+TL LG  GTYV+NKQ P  QIWLSSPVSGP  +++   ++ W   R +                 PI    S
Sbjct:   21 FSTNVFGLRCRYYSQ--VRHNGALTDLEYHRVADDTLDVLNDTFEDLLEEVGKKDYDIQYANGVITLMLGEKGTYVINKQPPAHQIWLSSPVSGPKHYEYSLKSKTWCSTRDEGTLLGILSSEFSKWFSRPIEFKKS 155          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_DICDI (Frataxin, mitochondrial OS=Dictyostelium discoideum GN=fxn PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.273e-15
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  116 HDL-QEKFEEYGDTIQI-------DGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRR 337
            HD+  E+FE + D ++I       +GF+V+  + VLT+ +G  GTYV+NKQTPNRQIW SSP+SGP RFD+D+  + WV  R
Sbjct:   89 HDIVDEEFELFVDRLEILSEANTCEGFEVEGNDGVLTIIVGNKGTYVINKQTPNRQIWWSSPLSGPKRFDYDSVEKRWVDNR 170          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_DROME (Frataxin homolog, mitochondrial OS=Drosophila melanogaster GN=fh PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 2
Query:   56 IDYRSLLQEDEFHRLANSTIHDLQEKFEEYGDTI-QIDGFDVDYGNEVLTLKLGAL-GTYVLNKQTPNRQIWLSSPVSGPSRFDW--DTGAQGWVYRRT 340
            I+  S L    + R+ + T+  L + FEE  +   ++ G DV Y + VLT+ LG   GTYV+N+QTPN+QIWLSSP SGP R+D+     A  W+Y+ +
Sbjct:   62 IETESTLDGATYERVCSDTLDALCDYFEELTENASELQGTDVAYSDGVLTVNLGGQHGTYVINRQTPNKQIWLSSPTSGPKRYDFVGTVAAGRWIYKHS 160          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_CAEEL (Frataxin homolog OS=Caenorhabditis elegans GN=frh-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.696e-13
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   71 LLQEDEFHRLANSTIHDLQEKFEEYGDTIQI-DGFDVDYGNEVLTLKLG-ALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVY 331
            +  ++E+   A+ST+  L + F++  D+  + + FDV +   VLT+ +  ++GTYV+NKQ+PN+QIWLSSP+SGP R+D +   + W Y
Sbjct:   19 IFSQNEYETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQSPNKQIWLSSPMSGPKRYDLEEEGK-WTY 106          
BLAST of CX298287 vs. ExPASy Swiss-Prot
Match: FRDA_YEAST (Frataxin homolog, mitochondrial OS=Saccharomyces cerevisiae GN=YFH1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.216e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   83 DEFHRLANSTIHDLQEKFEEYGDTIQIDGFDVDYGNEVLTLKLGALGTYVLNKQTPNRQIWLSSPVSGPSRFDWDTGAQGWVYRR 337
            +++H  A+  +  L +  EE  +       DV+  + V+TL++ A GTYV+NKQ PN+QIWL+SP+SGP+RFD   G   WV  R
Sbjct:   71 EKYHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFGTYVINKQPPNKQIWLASPLSGPNRFDLLNGE--WVSLR 153          
The following BLAST results are available for this feature:
BLAST of CX298287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
FRDA_ARATH5.776e-4668.29Frataxin homolog OS=Arabidopsis thaliana GN=FH PE=... [more]
FRDA_MOUSE1.213e-1954.26Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=... [more]
FRDA_HUMAN1.341e-1855.68Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=... [more]
FRDA_BOVIN2.987e-1854.55Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 ... [more]
FRDA_MACFA9.609e-1753.41Frataxin, mitochondrial OS=Macaca fascicularis GN=... [more]
FRDA_SCHPO2.796e-1632.85Frataxin homolog, mitochondrial OS=Schizosaccharom... [more]
FRDA_DICDI5.273e-1550.00Frataxin, mitochondrial OS=Dictyostelium discoideu... [more]
FRDA_DROME2.004e-1442.42Frataxin homolog, mitochondrial OS=Drosophila mela... [more]
FRDA_CAEEL1.696e-1340.45Frataxin homolog OS=Caenorhabditis elegans GN=frh-... [more]
FRDA_YEAST1.216e-1142.35Frataxin homolog, mitochondrial OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC06010F01SK RindPdig24 Citrus clementina cDNA clone C06010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298287 ID=CX298287; Name=CX298287; organism=Citrus clementina; type=EST; length=591bp
AAACTTCTCCTCTCGTCCTTCCGGTCTAGACAGTGACTTTCAAGCCCCTG
AAGCCATTGATTATCGTTCTCTTCTGCAGGAGGATGAATTTCACAGGCTA
GCTAACTCCACAATCCATGACTTGCAAGAGAAATTTGAGGAATACGGTGA
TACCATCCAAATTGATGGCTTTGATGTAGATTATGGGAATGAGGTTTTGA
CCCTTAAACTTGGGGCTTTGGGCACTTATGTGTTGAACAAGCAAACGCCA
AATAGGCAAATTTGGTTGTCTTCTCCAGTGAGCGGTCCATCCAGGTTTGA
TTGGGATACGGGTGCACAAGGCTGGGTATATAGACGCACTAAAGCTAACT
TGTTAAAACTTCTGGAAAGTGAATTGGAGCAGCTGTGTGGTGAGCCTATC
AATCTGTCGTCAAGCTGTTAAAGGTCCTGTGATACATAACTAGAGATGTT
GTCTTGTTATTAATATTCATTTCAGTAATTAGAAAATTTTCTTGTTTATT
ATTACTATGGAATACTATTATTCTTATTATTACTTTAAGATCTCCCAATA
NAAGGATGGATACTTATGTTCATCAACCAGTTTAGGAAAAT
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