CX298289

Overview
NameCX298289
Unique NameCX298289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15134 contig Ccv1_Contig15134:241..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_AEDAE (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 36/93 (38.71%), Postives = 62/93 (66.67%), Query Frame = 2 
Query:   32 LLQRLNSLVSELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 310
            L Q++ SLV+ L  + KL  + ++ VP+EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL++TFP E+  Y+ IR +
Sbjct:   37 LNQKIQSLVTGLQEIDKLKNQVDVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYKAIRGD 129
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_ANOGA (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 36/93 (38.71%), Postives = 61/93 (65.59%), Query Frame = 2 
Query:   32 LLQRLNSLVSELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 310
            L Q++ SLV+ L  + KL  + ++ VP+EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL +TFP E+  Y+ IR +
Sbjct:   37 LNQKIQSLVTGLQEIDKLKNQIDVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYKAIRGD 129
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_MOUSE (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:   17 ASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 304
            +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:   32 SSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_PONAB (Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:   17 ASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 304
            +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:   32 SSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_HUMAN (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:   17 ASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 304
            +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:   32 SSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_BOVIN (Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:   17 ASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 304
            +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  YR IR
Sbjct:   32 SSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_XENTR (Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 2 
Query:   17 ASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 304
            +SQ  L Q+LN LV+ L ++ K  ++ + I VP+EV + ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  Y+ IR
Sbjct:   32 SSQAGLNQKLNFLVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAIR 128
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_XENLA (Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 36/97 (37.11%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:   17 ASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 304
            +SQ  L Q+LN LV  L ++ K  ++ + I VP+EV + ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+ EL + FP+++  Y+ +R
Sbjct:   32 SSQAGLNQKLNFLVRGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLKKFKSLLIQELSKVFPEDMAKYKAVR 128
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_MACFA (Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 2 
Query:   17 ASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIR 304
            +SQ  L Q+LN +V+ L ++ K  ++ + I VP+EV   ID G+NP  +T++ +   +AKN+  KGK D  K  +  L+  L + FP+++  YR IR
Sbjct:   32 SSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQGLSKVFPEDMAKYRSIR 128
[Close]
BLAST of CX298289 vs. ExPASy Swiss-Prot
Match: MED10_DROME (Mediator of RNA polymerase II transcription subunit 10 OS=Drosophila melanogaster GN=MED10 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 2 
Query:   32 LLQRLNSLVSELDNMVKL-SEKCNIQVPMEVL-NLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 313
            L Q++NSLV+ L  + KL S+  ++ VP EV  + ID  KNP  +T+D +   +AKN+  KGK +  K  + +LL EL +TFP+E+  YR  R +S
Sbjct:   37 LNQKINSLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGLKKFKTNLLLELYKTFPNEMNNYRAYRKDS 132
The following BLAST results are available for this feature:
BLAST of CX298289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MED10_AEDAE5.240e-1638.71Mediator of RNA polymerase II transcription subuni... [more]
MED10_ANOGA1.167e-1538.71Mediator of RNA polymerase II transcription subuni... [more]
MED10_MOUSE2.434e-1338.14Mediator of RNA polymerase II transcription subuni... [more]
MED10_PONAB3.179e-1338.14Mediator of RNA polymerase II transcription subuni... [more]
MED10_HUMAN3.179e-1338.14Mediator of RNA polymerase II transcription subuni... [more]
MED10_BOVIN3.179e-1338.14Mediator of RNA polymerase II transcription subuni... [more]
MED10_XENTR4.152e-1338.14Mediator of RNA polymerase II transcription subuni... [more]
MED10_XENLA9.250e-1337.11Mediator of RNA polymerase II transcription subuni... [more]
MED10_MACFA2.061e-1237.11Mediator of RNA polymerase II transcription subuni... [more]
MED10_DROME3.515e-1241.67Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionC06010F03SK RindPdig24 Citrus clementina cDNA clone C06010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298289 ID=CX298289; Name=CX298289; organism=Citrus clementina; type=EST; length=710bp
AGGCTTCCTTCATGCTGCCTCCCAGCTCCCTCTCCTACAAAGACTCAATT
CTCTTGTTTCGGAGCTTGACAACATGGTTAAGTTGTCTGAGAAGTGCAAT
ATTCAAGTGCCCATGGAAGTGCTTAATTTGATTGATGACGGAAAAAATCC
TGATGAATTCACAAGGGATGTTATAAACAGCTGCATTGCTAAAAACCAAG
TCACCAAAGGAAAAACTGATGCTTTCAAGAGTTTACGTAAGCATCTTTTG
GACGAACTTGAGCAGACATTTCCGGATGAAGTTGAAGCATATAGAGAGAT
ACGTGCAAATTCTGCTGCTGAAGCAAAGCGTCTTGCTCAATCACAAAGTA
TGTTGCCAAATGGAGATGTGAAAGTTAAATCTGAGCTTTAAATGTCCCAT
TTCATGCAGAGTGTTGGGGCTCTTTCGACTACTACTTTCTCAATGTAATG
TCATGAGTCGTTCCAGTTCAGCAGCATTCAATGATTAAATCTGAAAAAAT
TTGGTTTACTGTATACCATTAATGAAGCAATTTCATTTAGAATAAACCAA
TGGCCGGTAATACGTGCTTCAAATGCATTCCATTATGTTGTATACCCTGC
TACATGATTTGTGATATTTACATGCTTTGAATGCATTCATAAACGTTGTA
TGCCCTGCTATATGATTTGTGATATAGGTTGATCTCCTTCACAAATTTGA
TACATGTAGC
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