CX298292

Overview
NameCX298292
Unique NameCX298292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15504 contig Ccv1_Contig15504:859..1410. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298292 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    1 IVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRI 267
            IVNIGD LEIITNGTYRSIEHR VVNS +ERLS+AT ++V    EV PA SL+  +    F+R+ ++EY    ++R L GK+ LD+LRI
Sbjct:  270 IVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CX298292 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 IVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRI 267
            +VNIGD +EI++NG Y+SIEHRAV+N+ +ERLS+A  +   Y  ++ P   L+ E     ++ +  E+Y       +L GKS LD +++
Sbjct:  265 VVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENGVK-YKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CX298292 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.984e-11
Identity = 31/98 (31.63%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 IVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGE------VY-PASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRIQH 273
            ++NI D L++ITN  ++S+EHR + N V  R+SVA  + ++   +      +Y P   LISE+ PP+++ V ++++   R+A+     S L   R+ +
Sbjct:  304 VINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRLNN 401          
The following BLAST results are available for this feature:
BLAST of CX298292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SRG1_ARATH6.132e-2057.30Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA6.146e-1239.33S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
DV4H_CATRO3.984e-1131.63Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06010F06SK RindPdig24 Citrus clementina cDNA clone C06010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298292 ID=CX298292; Name=CX298292; organism=Citrus clementina; type=EST; length=551bp
ATTGTCAACATTGGAGACACATTGGAGATTATAACCAATGGGACATACCG
CAGCATTGAGCATCGTGCAGTTGTAAACTCTGTACAGGAAAGACTTTCCG
TTGCCACAGTTTACTCAGTGAGATATGATGGTGAAGTGTATCCTGCCTCC
AGTTTGATCTCTGAAAAAACTCCTCCTTTGTTTAGAAGAGTGAGAATTGA
AGAATACTTTAGGAGCCGGTATGCTCGTGAGCTTAGGGGAAAATCTCAGT
TGGATTCCCTGAGAATTCAACATGGTCAAGGCTAGTATAAGTTTATTTTG
GATAACTAAAGAGTTTGGTACAAAAACTCTTAAGGACCTTGCTATTAAGA
TTGGCGTGGAACTGAAAATAAGAAATAAGTTCTATGAATACTGTGGTATA
ACCTGCTATGCTAGGGTCGTTGTGTAGCTCTATCATTTGAGATACTGAAT
AGACCATGTAAGAATCTTAATTATTGCAGACTTATGCCTGGAATCTTCCG
ATGATATATGGTGGTGCTTATATCAGATCAAAAAAAAAAAAAAAAAAAAA
A
back to top