CX298297

Overview
NameCX298297
Unique NameCX298297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8297 contig Ccv1_Contig8297:924..1674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 437.573 bits (1124), Expect = 3.481e-122
Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQVRAAESSRTRA 659
            FKVLYPTLTDYDIRYYIYELLKALD+CHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDN DQLVKIAKVLGTDELNAYLNKY LELDPQL+ALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTA+EAMAH YFAQVRAAE+SR R+
Sbjct:  116 FKVLYPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHAYFAQVRAAETSRMRS 332
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 435.647 bits (1119), Expect = 1.323e-121
Identity = 207/216 (95.83%), Postives = 212/216 (98.15%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQVRAAESSRTR 656
            FKVLYPTLTDYDIRYYIYELLKALD+CHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDN DQLVKIAKVLGTDELNAYLNKY LELD QL+ALVGRHSRKPWSKFINADN+HLVSPEAID+LDKLLRYDHQDRLTA+EAMAHPYFAQVRAAESSR R
Sbjct:  116 FKVLYPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDTQLEALVGRHSRKPWSKFINADNRHLVSPEAIDYLDKLLRYDHQDRLTAKEAMAHPYFAQVRAAESSRMR 331
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK2A_MAIZE (Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1)

HSP 1 Score: 433.721 bits (1114), Expect = 5.026e-121
Identity = 205/217 (94.47%), Postives = 210/217 (96.77%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQVRAAESSRTRA 659
            FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD LN YLNKY +ELDPQL+ALVGRHSRKPW KF+NADNQHLVSPEAIDFLDKLLRYDHQ+RLTA EAM HPYF QVRAAE+SRTRA
Sbjct:  116 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALVGRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQVRAAENSRTRA 332
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK23_ARATH (Probable casein kinase II subunit alpha OS=Arabidopsis thaliana GN=At2g23080 PE=2 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 4.705e-119
Identity = 202/216 (93.52%), Postives = 210/216 (97.22%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQVRAAESSRTR 656
            FKVLYPTLTDYDIRYYIYELLKALD+CHSQGIMHRDVKPHNVMIDH+LRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT+EL+ YLNKY L+LDPQL+ALVGRH  KPWSKFINADNQHLVSPEAIDFLDKLL+YDHQDRLTAREAM HPYFAQV+AAESSR R
Sbjct:  116 FKVLYPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHQLRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTNELDHYLNKYQLDLDPQLEALVGRHVPKPWSKFINADNQHLVSPEAIDFLDKLLQYDHQDRLTAREAMDHPYFAQVKAAESSRLR 331
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK2A_DROME (Casein kinase II subunit alpha OS=Drosophila melanogaster GN=CkIIalpha PE=1 SV=2)

HSP 1 Score: 365.54 bits (937), Expect = 1.681e-100
Identity = 168/207 (81.16%), Postives = 189/207 (91.30%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQV 629
            FK LY TLTDY+IRYY++ELLKALDYCHS GIMHRDVKPHNVMIDHE RKLRLIDWGLAEFYHPG+EYNVRVASRYFKGPELLVD Q YDYSLDMWSLGCM A MIFRKEPFF+GHDN+DQLV+IAKVLGT+EL AYL+KY+++LDP+   ++ RHSRK W +F+++DNQHLVSPEA+DFLDKLLRYDH DRLTAREAMAHPYF  +
Sbjct:  119 FKQLYQTLTDYEIRYYLFELLKALDYCHSMGIMHRDVKPHNVMIDHENRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEELYAYLDKYNIDLDPRFHDILQRHSRKRWERFVHSDNQHLVSPEALDFLDKLLRYDHVDRLTAREAMAHPYFLPI 325
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK21_XENLA (Casein kinase II subunit alpha OS=Xenopus laevis GN=csnk2a1 PE=2 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 6.388e-100
Identity = 171/227 (75.33%), Postives = 196/227 (86.34%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQVRAAESSRTRA*QPASWSSYP 689
            FK LY TLTDYDIR+Y+YE+LKALDYCHS GIMHRDVKPHNVMIDHE RKLRLIDWGLAEFYHPG+EYNVRVASRYFKGPELLVD Q YDYSLDMWSLGCM A MIFRKEPFF+GHDN+DQLV+IAKVLGT++L  Y++KY++ELDP+ + ++GRHSRK W +F++++NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYF  +   + SR       S SS P
Sbjct:  121 FKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQTRLTAREAMDHPYFYPI-VKDQSRMGGSNMPSGSSTP 346
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 6.388e-100
Identity = 166/207 (80.19%), Postives = 189/207 (91.30%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQV 629
            FK LY TLTDYDIR+Y+YE+LKALDYCHS GIMHRDVKPHNVMIDHE RKLRLIDWGLAEFYHPG+EYNVRVASRYFKGPELLVD Q YDYSLDMWSLGCM A MIFRKEPFF+GHDN+DQLV+IAKVLGT++L  Y++KY++ELDP+ + ++GRHSRK W +F++++NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYF  V
Sbjct:  121 FKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK21_RABIT (Casein kinase II subunit alpha OS=Oryctolagus cuniculus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.388e-100
Identity = 166/207 (80.19%), Postives = 189/207 (91.30%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQV 629
            FK LY TLTDYDIR+Y+YE+LKALDYCHS GIMHRDVKPHNVMIDHE RKLRLIDWGLAEFYHPG+EYNVRVASRYFKGPELLVD Q YDYSLDMWSLGCM A MIFRKEPFF+GHDN+DQLV+IAKVLGT++L  Y++KY++ELDP+ + ++GRHSRK W +F++++NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYF  V
Sbjct:  121 FKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.388e-100
Identity = 166/207 (80.19%), Postives = 189/207 (91.30%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQV 629
            FK LY TLTDYDIR+Y+YE+LKALDYCHS GIMHRDVKPHNVMIDHE RKLRLIDWGLAEFYHPG+EYNVRVASRYFKGPELLVD Q YDYSLDMWSLGCM A MIFRKEPFF+GHDN+DQLV+IAKVLGT++L  Y++KY++ELDP+ + ++GRHSRK W +F++++NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYF  V
Sbjct:  121 FKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327
[Close]
BLAST of CX298297 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.388e-100
Identity = 166/207 (80.19%), Postives = 189/207 (91.30%), Query Frame = 3 
Query:    9 FKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFAQV 629
            FK LY TLTDYDIR+Y+YE+LKALDYCHS GIMHRDVKPHNVMIDHE RKLRLIDWGLAEFYHPG+EYNVRVASRYFKGPELLVD Q YDYSLDMWSLGCM A MIFRKEPFF+GHDN+DQLV+IAKVLGT++L  Y++KY++ELDP+ + ++GRHSRK W +F++++NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYF  V
Sbjct:  121 FKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327
The following BLAST results are available for this feature:
BLAST of CX298297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSK21_ARATH3.481e-12295.85Casein kinase II subunit alpha-1 OS=Arabidopsis th... [more]
CSK22_ARATH1.323e-12195.83Casein kinase II subunit alpha-2 OS=Arabidopsis th... [more]
CSK2A_MAIZE5.026e-12194.47Casein kinase II subunit alpha OS=Zea mays GN=ACK2... [more]
CSK23_ARATH4.705e-11993.52Probable casein kinase II subunit alpha OS=Arabido... [more]
CSK2A_DROME1.681e-10081.16Casein kinase II subunit alpha OS=Drosophila melan... [more]
CSK21_XENLA6.388e-10075.33Casein kinase II subunit alpha OS=Xenopus laevis G... [more]
CSK21_RAT6.388e-10080.19Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_RABIT6.388e-10080.19Casein kinase II subunit alpha OS=Oryctolagus cuni... [more]
CSK21_HUMAN6.388e-10080.19Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_BOVIN6.388e-10080.19Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]

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Properties
Property NameValue
Genbank descriptionC06010F11SK RindPdig24 Citrus clementina cDNA clone C06010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298297 ID=CX298297; Name=CX298297; organism=Citrus clementina; type=EST; length=751bp
AGCACTGATTTAAAGTTTTGTACCCCACATTGACTGACTATGACATACGC
TATTACATATACGAGCTTCTGAAGGCATTAGATTACTGCCATTCACAGGG
AATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGACCATGAGT
TGCGTAAACTTCGTTTGATTGACTGGGGTCTTGCTGAATTTTACCATCCT
GGCAAGGAGTATAATGTTCGTGTGGCTTCTAGATACTTCAAGGGACCAGA
ACTCCTTGTGGATTTACAGGACTATGACTACTCTTTAGATATGTGGAGCC
TTGGTTGCATGTTTGCAGGAATGATATTTCGGAAGGAGCCATTCTTTTAT
GGTCATGACAACCATGATCAGCTTGTCAAAATTGCCAAGGTACTGGGAAC
TGATGAGTTAAATGCATATCTGAACAAATATCATTTAGAGCTTGATCCTC
AACTCGATGCACTTGTTGGGAGGCACAGCCGGAAGCCATGGTCAAAATTT
ATTAATGCTGATAATCAGCATCTGGTTTCTCCAGAGGCAATAGATTTTCT
TGATAAGCTCCTCCGTTATGATCACCAGGATAGGCTAACTGCTAGGGAGG
CAATGGCCCATCCATATTTCGCACAAGTGAGGGCTGCTGAGAGTAGCAGG
ACCCGCGCATAGCAGCCTGCCTCATGGAGTTCCTATCCGAACTGAATTCC
TTATCATTGCTCAAATGATATGTATCGTGCTTATACTGTTTGATCAATTG
C
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