CX298298

Overview
NameCX298298
Unique NameCX298298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298298_ssr350 microsatellite CX298298_ssr350:350..361. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_SCHPO (Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe GN=SPAC227.10 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.887e-26
Identity = 55/109 (50.46%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   54 PKKQQELQHQYTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVVQ 380
            P +QQ LQ QY ++K+ LQQ+AQKI D+E +A+EHKLV++TL+ +  +R+CFRM++GVLVERTV  V+P LKT  +G++  +  +L QYK  + E   ++K N IQVV+
Sbjct:    5 PSRQQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQVVR 113          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_ARATH (Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   51 DPKKQQELQHQYTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVVQ 380
            +P  +Q + + Y   ++ L Q+   I D+E +  EH LVI  + PL   RKCFRM+ GVLVERT+K+VLP ++ N DGL++V+  + +  + K+ +L  ++ K  I++ +
Sbjct:   12 EPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITK 121          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_HUMAN (Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 40/98 (40.82%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   84 YTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVV 377
            +   +   + LA K  ++E E  EH LVI+TL  +   RKC+RMV GVLVERTVK+VLP L+ N + +++++E + +Q ++K  EL+ +++K+NI+++
Sbjct:   30 FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLM 127          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_BOVIN (Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 40/98 (40.82%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   84 YTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVV 377
            +   +   + LA K  ++E E  EH LVI+TL  +   RKC+RMV GVLVERTVK+VLP L+ N + +++++E + +Q ++K  EL+ +++K+NI+++
Sbjct:   30 FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLM 127          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_RAT (Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.567e-17
Identity = 40/98 (40.82%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   84 YTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVV 377
            +   +   + LA K  ++E E  EH LVI+TL  +   RKC+RMV GVLVERTVK+VLP L+ N + +++++E + +Q ++K  EL+ +++K+NI+++
Sbjct:   30 FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLM 127          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_MOUSE (Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.567e-17
Identity = 40/98 (40.82%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   84 YTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVV 377
            +   +   + LA K  ++E E  EH LVI+TL  +   RKC+RMV GVLVERTVK+VLP L+ N + +++++E + +Q ++K  EL+ +++K+NI+++
Sbjct:   30 FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLM 127          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_DROME (Probable prefoldin subunit 2 OS=Drosophila melanogaster GN=l(3)01239 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   30 MSSQKQIDPKKQQELQHQYTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQV 374
            MS++       Q+ +  Q+   +N  + L   +  +E +  EHK VIETL+    +RKCFR + GVL ERTVK+VLP L  N D + + ++ +      K  EL+ +K+++NI++
Sbjct:    1 MSTESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKI 115          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_DICDI (Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 3
Query:   30 MSSQKQIDPKKQQELQHQYTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQV 374
            MS QKQ    + Q ++H Y + K+  QQ+  +I + E +  E+ LVI  +  L ++RKCFRMV GVLVERTV +VLP +K N DG+K+V++ + +    K  EL+++     I++
Sbjct:    1 MSQQKQ-QLTENQIIEH-YKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMVGGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_YEAST (Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN=GIM4 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 3
Query:   57 KKQQELQHQYTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVVQ 380
            ++    Q +Y  +K  L++L  KI ++  + +EH +VI+TL      RKC+RM+ G LVE  V+  LP L+T  + ++  +  M +       E + WKK N IQVV+
Sbjct:    3 QRNNVFQAKYNEYKQILEELQTKIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDVQTSLPILETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQVVK 110          
BLAST of CX298298 vs. ExPASy Swiss-Prot
Match: PFD2_CAEEL (Probable prefoldin subunit 2 OS=Caenorhabditis elegans GN=tag-355 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 39/120 (32.50%), Postives = 69/120 (57.50%), Query Frame = 3
Query:   18 QTAIMSSQKQIDPKKQQELQHQYTNFKNTLQQLAQKIGDIEQEAEEHKLVIETLDPLPADRKCFRMVNGVLVERTVKDVLPTLKTNSDGLKQVLEDMLKQYKSKQGELDNWKKKNNIQVV 377
            QTA  +  +Q   ++Q+++  ++   ++  Q +A ++  IE+E  E   V+E +  L  D+KCFR+++  LVE TVKDV+P L+ N   L  V + +  Q   K  EL+  K  +NI+++
Sbjct:    5 QTAAATPAEQ---EEQRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRLL 121          
The following BLAST results are available for this feature:
BLAST of CX298298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PFD2_SCHPO1.887e-2650.46Probable prefoldin subunit 2 OS=Schizosaccharomyce... [more]
PFD2_ARATH8.490e-1937.27Probable prefoldin subunit 2 OS=Arabidopsis thalia... [more]
PFD2_HUMAN1.601e-1740.82Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 ... [more]
PFD2_BOVIN1.601e-1740.82Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV... [more]
PFD2_RAT3.567e-1740.82Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 ... [more]
PFD2_MOUSE3.567e-1740.82Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 ... [more]
PFD2_DROME3.944e-1634.78Probable prefoldin subunit 2 OS=Drosophila melanog... [more]
PFD2_DICDI6.727e-1640.00Probable prefoldin subunit 2 OS=Dictyostelium disc... [more]
PFD2_YEAST4.821e-1434.26Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN... [more]
PFD2_CAEEL2.239e-1132.50Probable prefoldin subunit 2 OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionC06010F12SK RindPdig24 Citrus clementina cDNA clone C06010F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298298 ID=CX298298; Name=CX298298; organism=Citrus clementina; type=EST; length=543bp
GTGCCGACCACCCCTGTCAAACAGCCATCATGTCTAGTCAGAAACAGATT
GACCCCAAGAAGCAGCAGGAGCTTCAGCACCAATACACCAACTTCAAGAA
TACCCTTCAGCAATTAGCCCAAAAGATTGGTGATATTGAGCAAGAGGCAG
AAGAACACAAACTTGTGATTGAAACCCTCGACCCTCTCCCCGCAGACCGC
AAATGTTTCCGCATGGTGAATGGCGTTTTGGTTGAGCGCACTGTCAAAGA
TGTGCTTCCTACACTGAAGACCAACTCGGATGGGTTGAAGCAAGTTTTGG
AGGACATGCTCAAGCAGTACAAGTCAAAGCAGGGTGAGCTGGATAACTGG
AAGAAGAAGAACAACATTCAGGTTGTGCAGCCTTAATGGTATTTCTTTTA
TCTGTATACTTTCGATTTACGTGTTCCCGGGTGGTGCTATCTAAGTGCAA
GAGCAATAGGCTACCGGCGTTACTGGGAACAACAAAAAACTAGACATAAT
GCAGCGTTGATTTGTGCTTTGAAAAAAAAAAAAAAAAAAAAAA
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