CX298308

Overview
NameCX298308
Unique NameCX298308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C76C4_ARATH (Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.002e-52
Identity = 95/155 (61.29%), Postives = 121/155 (78.06%), Query Frame = 1
Query:    1 ARLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED----ENMDMEEKFG 453
            A+ E+++ +G+   ++ESDI+ LPYLQAVVKET RLHPA PLL+PRKA +DVE+ GF+VPK  QV VN WAIGRD   WENP  F PERF+G ++D KGR++EL PFG GRRICPGLPLA++ + LML SL+ SFDWKL +    E++DM+E FG
Sbjct:  337 AQAEMDRVLGQNSVVQESDISGLPYLQAVVKETFRLHPAAPLLVPRKAESDVEVLGFMVPKDTQVLVNVWAIGRDPSVWENPSQFEPERFMGKDIDVKGRDYELTPFGGGRRICPGLPLAVKTVSLMLASLLYSFDWKLPNGVVSEDLDMDETFG 491          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C76C2_ARATH (Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.807e-52
Identity = 97/155 (62.58%), Postives = 121/155 (78.06%), Query Frame = 1
Query:    1 ARLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED----ENMDMEEKFG 453
            A+ E++  IG+   +EESDI+ LPYLQAVVKET RLHPA PLL+PRKA +DVE+ GF+VPK  QVFVN WAIGRD   WEN   F PERFLG ++D +GR++EL PFG+GRRICPGLPLA++ + LML SL+ SFDWKL +    E++DM+E FG
Sbjct:  338 AQAEIDCVIGQKGVVEESDISALPYLQAVVKETFRLHPAAPLLVPRKAESDVEVLGFMVPKDTQVFVNVWAIGRDPNVWENSSRFKPERFLGKDIDLRGRDYELTPFGAGRRICPGLPLAVKTVPLMLASLLYSFDWKLPNGVGSEDLDMDETFG 492          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C76B1_HELTU (7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.037e-49
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 1
Query:    1 ARLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED----ENMDMEEKFG 453
            A+ ELE+ IGKG  ++E D+ RLPYL  +VKE LRLHP  PLLLPRK +  VE++G+ +P G  VFVNAWAIGRD   W++ L F P+RFL S LD +G +F+LIPFG+GRRICPG+PLA RM+ +MLGSL+N+FDWK++     + +DM EK G
Sbjct:  319 AKEELEKVIGKGSIVKEDDVLRLPYLSCIVKEVLRLHPPSPLLLPRKVVTQVELSGYTIPAGTLVFVNAWAIGRDPTVWDDSLEFKPQRFLESRLDVRGHDFDLIPFGAGRRICPGIPLATRMVPIMLGSLLNNFDWKIDTKVPYDVLDMTEKNG 473          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C76C1_ARATH (Cytochrome P450 76C1 OS=Arabidopsis thaliana GN=CYP76C1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.354e-49
Identity = 93/155 (60.00%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    1 ARLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE----DENMDMEEKFG 453
            A+ E++  IG+   +EESDI++LPYLQAVVKET RLH  VPLL+PRKA +D EI GF+V K  QV VN WAIGRD   W+NP  F PERFLG ++D +GR++EL PFG+GRRICPG+PLA++ + LML SL+ SFDWKL      E++DM+E FG
Sbjct:  337 AQAEIDCVIGQNGIVEESDISKLPYLQAVVKETFRLHTPVPLLIPRKAESDAEILGFMVLKDTQVLVNVWAIGRDPSVWDNPSQFEPERFLGKDMDVRGRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMDETFG 491          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 2.309e-49
Identity = 93/155 (60.00%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    1 ARLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED----ENMDMEEKFG 453
            A+ E+ Q IG+   ++ESDI  LPYLQA+VKETLRLHPA PL+ PRK+ +DV+I GF+VPK  QV VN WAIGRD   WENP+ F PERFL    D KGR+FELIPFGSGRR+CPG+ +A++ +H++L SL+ SFDWKL++     N+DM E FG
Sbjct:  339 AQSEIRQVIGQNGFVQESDIPSLPYLQAIVKETLRLHPAAPLI-PRKSESDVQIMGFLVPKNTQVVVNVWAIGRDASVWENPMKFEPERFLLRETDVKGRDFELIPFGSGRRMCPGISMALKTMHMVLASLLYSFDWKLQNGVVPGNIDMSETFG 492          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C76A1_SOLME (Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.655e-47
Identity = 88/154 (57.14%), Postives = 112/154 (72.73%), Query Frame = 1
Query:    4 RLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL----EDENMDMEEKFG 453
            +LE+ Q IG  K  EE DI  LPY+QAV+KE LRLHP +PLL+PRKA+ D +  G+ +PKG QV VNAWAIGRD   W+NP  F PERFL S +D KG+N+ELIPFG+GRR+C GLPL  RM+H   GSL++ FDW+L      ++++MEE  G
Sbjct:  298 KLEILQVIGPNKKFEECDIDSLPYMQAVLKEQLRLHPPLPLLIPRKAIQDTKFMGYDIPKGTQVLVNAWAIGRDPEYWDNPFEFKPERFLESKVDVKGQNYELIPFGAGRRMCVGLPLGHRMMHFTFGSLLHEFDWELPHNVSPKSINMEESMG 451          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 8.500e-44
Identity = 78/140 (55.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    4 RLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED 423
            + E+ Q I   +  E+SDI  LPY+QAV+KE+LRLHP +P L+PR+ + D +  G+ VPK  QV VNAWAIGRD   W++P+SF PERFLGS +D KG+++ LIPFG+GRR+C GLPL  RM+H  LGSL+  F+W+L D
Sbjct:  336 KTEISQAIEPNRKFEDSDIENLPYMQAVLKESLRLHPPLPFLIPRETIQDTKFMGYDVPKDTQVLVNAWAIGRDPECWDDPMSFKPERFLGSKIDVKGQHYGLIPFGAGRRMCVGLPLGHRMMHFALGSLLREFEWELPD 475          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C80A1_BERST (Berbamunine synthase OS=Berberis stolonifera GN=CYP80A1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.398e-43
Identity = 76/153 (49.67%), Postives = 112/153 (73.20%), Query Frame = 1
Query:    4 RLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED----ENMDMEEKF 450
            R EL++ +G+  T++ES  + LPYLQA VKET+RL+P + +++P + +   ++ G+ +PKG  V VNA AIGRD   W++PL F PERFL S++++ G+ F+ IPFGSGRRICPG PLA+R++ L+L SL+++F W+L D    E +DMEE F
Sbjct:  317 REELDRVVGRSSTVKESHFSELPYLQACVKETMRLYPPISIMIPHRCMETCQVMGYTIPKGMDVHVNAHAIGRDPKDWKDPLKFQPERFLDSDIEYNGKQFQFIPFGSGRRICPGRPLAVRIIPLVLASLVHAFGWELPDGVPNEKLDMEELF 469          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C80B2_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.227e-42
Identity = 80/154 (51.95%), Postives = 112/154 (72.73%), Query Frame = 1
Query:    4 RLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED----ENMDMEEKFG 453
            R EL+  +G+ ++++ESD   LPYL+A VKETLRLHP  PLLLPR+AL    I  + +PK  Q+ VNAW IGRD  TW +PL+F PERFL S++DF+G +F LIPFG+GRRICPGLP+A + + L++ + + + DW L +    +++ +EEKFG
Sbjct:  319 RSELQTVVGE-RSVKESDFPNLPYLEATVKETLRLHPPTPLLLPRRALETCTILNYTIPKDCQIMVNAWGIGRDPKTWIDPLTFSPERFLNSSVDFRGNDFSLIPFGAGRRICPGLPIANQFIALLVATFVQNLDWCLPNGMSVDHLIVEEKFG 471          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C80B1_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.227e-42
Identity = 79/154 (51.30%), Postives = 112/154 (72.73%), Query Frame = 1
Query:    4 RLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED----ENMDMEEKFG 453
            R E++  +G+ ++++ESD   LPYL+A VKETLRLHP  PLLLPR+AL    I  + +PK  Q+ VNAW IGRD  TW +PL+F PERFL S++DF+G +F LIPFG+GRRICPGLP+A + + L++ + + + DW L +    +++ +EEKFG
Sbjct:  318 RSEIQTVVGE-RSVKESDFPNLPYLEATVKETLRLHPPTPLLLPRRALETCTILNYTIPKDCQIMVNAWGIGRDPKTWTDPLTFSPERFLNSSVDFRGNDFSLIPFGAGRRICPGLPIANQFIALLVATFVQNLDWCLPNGMSVDHLIVEEKFG 470          
The following BLAST results are available for this feature:
BLAST of CX298308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 494
Match NameE-valueIdentityDescription
C76C4_ARATH1.002e-5261.29Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CY... [more]
C76C2_ARATH3.807e-5262.58Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CY... [more]
C76B1_HELTU1.037e-4958.067-ethoxycoumarin O-deethylase OS=Helianthus tubero... [more]
C76C1_ARATH1.354e-4960.00Cytochrome P450 76C1 OS=Arabidopsis thaliana GN=CY... [more]
C76C3_ARATH2.309e-4960.00Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]
C76A1_SOLME1.655e-4757.14Cytochrome P450 76A1 (Fragment) OS=Solanum melonge... [more]
C76A2_SOLME8.500e-4455.71Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
C80A1_BERST9.398e-4349.67Berbamunine synthase OS=Berberis stolonifera GN=CY... [more]
C80B2_ESCCA1.227e-4251.95(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS... [more]
C80B1_ESCCA1.227e-4251.30(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionC06010G10SK RindPdig24 Citrus clementina cDNA clone C06010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298308 ID=CX298308; Name=CX298308; organism=Citrus clementina; type=EST; length=455bp
GCAAGATTAGAGTTAGAACAAACGATTGGTAAAGGCAAAACAATTGAGGA
ATCAGACATCACTCGGTTACCTTATCTACAAGCAGTAGTCAAAGAAACCT
TGAGGCTGCACCCAGCAGTTCCCTTGTTACTTCCTCGTAAAGCTTTAGCC
GACGTAGAAATTGCGGGCTTCATAGTTCCAAAAGGAGCACAGGTTTTTGT
TAATGCGTGGGCAATTGGCAGAGATGAACTCACATGGGAGAACCCTCTTT
CTTTTATGCCTGAGAGATTCTTGGGGTCAAATCTCGATTTCAAAGGCAGA
AACTTTGAGCTGATCCCCTTTGGATCTGGCCGGCGAATATGTCCTGGTTT
GCCGTTGGCAATTAGAATGTTACATCTAATGTTGGGTTCACTCATTAACT
CCTTTGATTGGAAGCTGGAAGATGAGAACATGGATATGGAAGAAAAATTT
GGCAT
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