CX298314

Overview
NameCX298314
Unique NameCX298314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX298314 vs. ExPASy Swiss-Prot
Match: EXOC6_ARATH (Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.607e-30
Identity = 67/140 (47.86%), Postives = 95/140 (67.86%), Query Frame = 2 
Query:    5 EAISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADN------LAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDALIKRLRD 406
            E IS +IV     DS+KRFN NA+  I+ D+R++E+FAD       L  ++ +G     ++ L E+RQL+NLL S+ PENF+NPVIRER+YN LD++KV TI EK +D +D +FG+  +R  K   KKKS+D L KRL++
Sbjct:  651 EHISNSIVSTFLSDSIKRFNANAVSAINHDLRVIENFADERYHSSGLNEIYKEGS---FRSYLVEARQLINLLSSSQPENFMNPVIRERNYNTLDYKKVATICEKFKDSADGIFGSLANRNTKLTAKKKSMDMLKKRLKE 787
The following BLAST results are available for this feature:
BLAST of CX298314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EXOC6_ARATH6.607e-3047.86Probable exocyst complex component 6 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC06010H04SK RindPdig24 Citrus clementina cDNA clone C06010H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298314 ID=CX298314; Name=CX298314; organism=Citrus clementina; type=EST; length=728bp
GGCCGAGGCCATATCAGAGACAATTGTAGGCGCTGTATATGGGGATTCTG
TGAAGAGGTTTAATATCAATGCTATTATGGGAATTGATGTAGATATTCGG
CTTTTGGAGTCATTTGCTGATAATTTGGCTCCCCTATTCACAGATGGGGA
TGCTAATCAGTTGAAGACAGCGCTTGCTGAGTCAAGACAGTTGGTGAATT
TGCTGTTGAGCAATCATCCTGAGAATTTTCTGAATCCAGTGATTAGGGAA
AGGAGTTACAATGCTTTGGACCACAGGAAAGTAGTGACAATTTCAGAGAA
GTTAAGAGATCCTTCAGATCGGCTTTTTGGAACTTTTGGAAGCAGGGGAG
CCAAACAGAATCCAAAAAAGAAATCACTGGATGCTTTGATAAAAAGACTA
AGGGATGTGAGCTAAGTCAGGGGCAGCTAAAACGCACCAAAGGGGATGGG
ATCGATACTCAGGAGAGGGAGAGGGAGAGACGGCAGAAGAACATCATTGG
GTAAGTATTGGGATTTGATAAATTGTCGGTCTTAGTTTTTGAACTGTCTT
GAAATCAACGGTTGTCTGAATTCAACACAAGTCCAACTTGTGCTATGCTC
GTCCTAATCTGATGTAAGTAGTTCAAATTGATGAAATTAGTGAAACAAAG
CAGAAATCAAAAAGTTCAAAAATTAAAAGTATTTTTTACGGTTTGATTCT
ATTCCAGCGGGCTATCCAGAGGTGAGTG
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