CX298315

Overview
NameCX298315
Unique NameCX298315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298315_ssr177 microsatellite CX298315_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9817 contig Ccv1_Contig9817:1177..1866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.985e-46
Identity = 81/130 (62.31%), Postives = 103/130 (79.23%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS 394
            ++ICDF+F+PCGYSMN++EG  +STIHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE LG  GS++Y  F+      SPRS L CCWS
Sbjct:  221 SDICDFDFEPCGYSMNAVEGGTISTIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFELDVKGYACGERSYEALGKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.274e-45
Identity = 81/130 (62.31%), Postives = 102/130 (78.46%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS 394
            +EICDF+F+PCGYSMN++EG A+S IHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE L   GS++Y  F+      SPRS L CCWS
Sbjct:  221 SEICDFDFEPCGYSMNAVEGGAISPIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFKLDVKGYACGERSYEGLNKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.129e-43
Identity = 85/130 (65.38%), Postives = 97/130 (74.62%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 391
            ++EICDFEFDPCGYSMNSIE  A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVLACF+P+EFSVA+H D+          L+LK YS  EKI EELG  GS+IY  F R D   SPRSILKCCW
Sbjct:  220 DSEICDFEFDPCGYSMNSIEEAAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSLEQICSLELKEYSLDEKINEELGLGGSIIYKKFLRIDACGSPRSILKCCW 349          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.074e-42
Identity = 79/129 (61.24%), Postives = 99/129 (76.74%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 391
            +EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD + ++L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F++     SP+S+LK CW
Sbjct:  223 SEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACFEPAEFSIALHADVATKLLERVCCVDVKGYSLAEWSPEEFGKGGSIVYQKFTKTPYCASPKSVLKGCW 351          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.015e-42
Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 391
            +EICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  223 SEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.015e-42
Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 391
            +EICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  223 SEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 80/128 (62.50%), Postives = 97/128 (75.78%), Query Frame = 2
Query:    8 EICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 391
            EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD +  +L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  222 EICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDPKTTELGPLVERVLACFEPAEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPYCESPKSVLKGCW 349          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 79/130 (60.77%), Postives = 100/130 (76.92%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 391
            ++EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  222 KSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCW 351          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.889e-41
Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALH--SDIVGDEHGDTFMLDLKGYSCGEKIYEEL-GNNGSLIYYSFSRADCST-SPRSILKCCWS 394
            E++ICDF+FDPCGYSMN+IEGDA+STIHVTPEDGFSYASFEAVGYDF+ + LT L+ERVLACF+P+EFSVALH   ++V D + +   +++KGY+  E  +E L G  GS++YY F+R   S  SPRS L  CWS
Sbjct:  220 ESQICDFDFDPCGYSMNAIEGDAISTIHVTPEDGFSYASFEAVGYDFKSMGLTVLIERVLACFEPSEFSVALHGNENVVKDLNLENNDVNVKGYNVEETKFEVLGGEGGSMVYYGFARGGSSCGSPRSTLHRCWS 354          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 77/133 (57.89%), Postives = 101/133 (75.94%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSR-ADCSTSPRSILKCCWS 394
            ++EICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL+CF+P +FSVA+HS +  + +     +DL+ Y C E+ +E LG  +G+++Y +F +      SPRS LKC WS
Sbjct:  219 KSEICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYKPEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTLKCEWS 351          
The following BLAST results are available for this feature:
BLAST of CX298315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_IPONI5.985e-4662.31S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA2.274e-4562.31S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_CATRO2.129e-4365.38S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_DATST3.074e-4261.24S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_TOBAC4.015e-4262.02S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_NICSY4.015e-4262.02S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLCI8.944e-4262.50S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_SOLTU3.399e-4160.77S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_HELAN9.889e-4162.22S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM1_ARATH1.428e-3957.89S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06010H05SK RindPdig24 Citrus clementina cDNA clone C06010H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298315 ID=CX298315; Name=CX298315; organism=Citrus clementina; type=EST; length=690bp
CGAGGCTGAGATTTGTGATTTTGAGTTTGACCCTTGTGGTTACTCCATGA
ATAGTATTGAAGGGGATGCAGTATCTACTATCCACGTCACACCTGAAGAT
GGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTGAGGTTGT
GAAGTTGACTCCCTTGCTTGAGAGGGTGCTTGCTTGCTTCAAACCCGCTG
AGTTTTCTGTTGCTCTGCATTCTGACATTGTTGGCGATGAACATGGAGAC
ACCTTCATGCTGGACTTGAAGGGATATTCCTGTGGAGAAAAGATATATGA
AGAGCTCGGTAATAATGGTTCGCTGATCTACTACAGCTTTTCGAGGGCTG
ATTGCTCCACATCTCCTAGGTCAATCTTGAAATGCTGTTGGAGCGAGGAC
GAGAAGGACGAGGAAGTTGAAGGGAAATAGTGTCCCGGATATAATATCGT
GTTTGTTTTTTTCATTTTAATCCTTCGCTTATATAATAAAATGTGGTGGG
GTTATGTAATGGTAGGGCTTGAGCAGCCTTTACCTTTCCGTTTTGCTGCA
TTTTTCCTGTTATTGTGAACAAGGTCTTATGTTTTTGGATTTCTGTTATG
TTGGATTTCCGGAGATGTAGATGTTAAACCAGTATCTTCTTTTATAATAA
GAGTCATATTATTATATCATAAAAAAAAAAAAAAAAAAAA
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