CX298320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 6.238e-42 Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 251 DYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WREA+ECLYVEPDEG KGV+WYRNK Sbjct: 304 DYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNK 386
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41 Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 254 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWREA+EC+YVEPD+ ++KGVFWY NK+ Sbjct: 300 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 9.008e-41 Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 254 DYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWREAKEC+YVEPD + KGVFWY NK+ Sbjct: 301 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVFWYNNKL 384
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.456e-39 Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 254 DYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+REAKEC+YVEPD KGV+WY NK+ Sbjct: 300 DYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVYWYNNKL 383
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27 Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWY 242 D+G LN V H++T THV HHLFS +PHYHA EA AI +LG++Y+ D TP KAMWREAKEC+++EP++G +KGV+WY Sbjct: 293 DFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVYWY 372
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16 Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3 Query: 15 LNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 218 L+ +FH I THVAHHLFS MP YHA EAT +K +LGEYY +D +P A+WR +EC +VE D GD Sbjct: 328 LDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16 Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3 Query: 15 LNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 218 L+ +FH I THVAHHLFS MP YHA EAT +K +LGEYY +D +P A+WR +EC +VE D GD Sbjct: 328 LDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11 Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY----QFDGTPFY--KAMWREAKECLYVEPDEGD 218 DYG+ N + H+I THV HHLF +PHYH EATKA KP+LG+YY + PF+ K + R K+ YV D G+ Sbjct: 286 DYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVS-DSGE 361
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11 Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 140 DYG++N + H+I THV HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 310 DYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11 Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3 Query: 3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 140 DYG++N + H+I THV HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 352 DYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396 The following BLAST results are available for this feature:
BLAST of CX298320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX298320 ID=CX298320; Name=CX298320; organism=Citrus clementina; type=EST; length=421bpback to top |