CX298320

Overview
NameCX298320
Unique NameCX298320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:1022..1442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.238e-42
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 251
            DYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WREA+ECLYVEPDEG   KGV+WYRNK
Sbjct:  304 DYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNK 386          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 254
            DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWREA+EC+YVEPD+  ++KGVFWY NK+
Sbjct:  300 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.008e-41
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 254
            DYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWREAKEC+YVEPD   + KGVFWY NK+
Sbjct:  301 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVFWYNNKL 384          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.456e-39
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 254
            DYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+REAKEC+YVEPD     KGV+WY NK+
Sbjct:  300 DYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVYWYNNKL 383          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWY 242
            D+G LN V H++T THV HHLFS +PHYHA EA  AI  +LG++Y+ D TP  KAMWREAKEC+++EP++G  +KGV+WY
Sbjct:  293 DFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVYWY 372          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   15 LNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 218
            L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  328 LDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   15 LNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 218
            L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  328 LDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY----QFDGTPFY--KAMWREAKECLYVEPDEGD 218
            DYG+ N + H+I  THV HHLF  +PHYH  EATKA KP+LG+YY    +    PF+  K + R  K+  YV  D G+
Sbjct:  286 DYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVS-DSGE 361          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 140
            DYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  310 DYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354          
BLAST of CX298320 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3
Query:    3 DYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 140
            DYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  352 DYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396          
The following BLAST results are available for this feature:
BLAST of CX298320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
FD6E1_SOYBN6.238e-4289.16Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN5.281e-4185.71Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU9.008e-4185.71Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH6.456e-3983.33Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL5.669e-2760.00Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS1.547e-1657.35Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP1.547e-1657.35Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_TOBAC2.556e-1147.44Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA4.360e-1158.70Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH4.360e-1158.70Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06010H11SK RindPdig24 Citrus clementina cDNA clone C06010H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298320 ID=CX298320; Name=CX298320; organism=Citrus clementina; type=EST; length=421bp
GAGACTATGGGATCTTGAACAAGGTCTTCCATAACATTACTGATACTCAT
GTAGCTCACCATTTGTTTTCAACAATGCCACATTATCATGCAATGGAGGC
TACGAAGGCAATAAAGCCAATTTTGGGAGAATATTATCAGTTCGATGGGA
CTCCATTTTATAAGGCAATGTGGAGGGAAGCAAAGGAGTGTCTTTACGTT
GAACCGGACGAAGGTGACCAGAACAAAGGTGTCTTCTGGTACAGAAATAA
GATTTGAATTTGAGGAAAAGTTGTAGCAAAAATGCCATATGGGAAGTTTT
GTGTTTCTTGTCCGGTAATTTGGCTTCCCTTTTGTGGTGATTGAGGTTGT
TCTGTTACTTTTAATTGAACTTTAATTATAGACTTTTAGTTATGTTTCCT
CCAAAAAAAAAAAAAAAAAAA
back to top