CX298417

Overview
NameCX298417
Unique NameCX298417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298417_ssr315 microsatellite CX298417_ssr315:315..326. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CITSI (ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=clpP PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.686e-49
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA
Sbjct:   23 IYNRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_DAUCA (ATP-dependent Clp protease proteolytic subunit OS=Daucus carota GN=clpP PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.846e-45
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIEN+TKDLYLFINSPGGWVIPG+AIYDTMQFVRPDVQTICMGLAASMGSF+LA G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILAGGEITKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_GOSHI (ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.437e-44
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIEN+TKDLYLFINSPGGWVIPG+AIYDTMQFV+PDV TICMGLAASMGSFLLA G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_GOSBA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.437e-44
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIEN+TKDLYLFINSPGGWVIPG+AIYDTMQFV+PDV TICMGLAASMGSFLLA G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_PHAVU (ATP-dependent Clp protease proteolytic subunit OS=Phaseolus vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = 3 
Query:  189 ILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            ILINRLYRERLLFLGQ V+S+ISNQLI +M+YLSIE E KDLYLFINSPGGWVIPGIA+YDTMQFV+PDVQT+C+GLAASMGSFLLA G  TKRLAFPHA
Sbjct:   23 ILINRLYRERLLFLGQDVDSEISNQLISLMIYLSIEKENKDLYLFINSPGGWVIPGIALYDTMQFVQPDVQTVCLGLAASMGSFLLAGGTITKRLAFPHA 122
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_TOBAC (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE+ETKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_NICTO (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=clpP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE+ETKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_NICSY (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE+ETKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.876e-43
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE++TKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_COFAR (ATP-dependent Clp protease proteolytic subunit OS=Coffea arabica GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.876e-43
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 3 
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+M+YLSIE++TKDLYLFINSPGGWVIPG+AIYDTMQFVRPDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQAVDSEISNQLIGLMIYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121
The following BLAST results are available for this feature:
BLAST of CX298417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CITSI2.686e-4997.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DAUCA6.846e-4589.69ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GOSHI4.437e-4488.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GOSBA4.437e-4488.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHAVU9.885e-4485.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_TOBAC1.291e-4387.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NICTO1.291e-4387.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NICSY1.291e-4387.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SPIOL2.876e-4386.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COFAR2.876e-4385.57ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06012A03SK RindPdig24 Citrus clementina cDNA clone C06012A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298417 ID=CX298417; Name=CX298417; organism=Citrus clementina; type=EST; length=703bp
GAATATTATAGGTCTAGGAAACCGGCTAAACTCAGCGTTCTTGAAAACCG
GAAGAAAAGCCCCTCGATAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTA
GGAGCTACACATTGATTCGTTTTTCGCAAGTTTTGTTGAACCGTATGCAT
CAAAAGATGCCTGTACGGCTCCGAAGGGATACTGTTTTATCCTAATCAAC
CGACTTTATCGAGAAAGATTACTTTTTTTAGGTCAAATGGTTGAGAGCGA
TATCTCGAATCAACTTATTGGTATTATGGTATATCTCAGTATAGAGAACG
AGACCAAGGATTTGTATTTATTTATTAACTCTCCTGGCGGATGGGTAATA
CCCGGGATAGCAATTTATGATACTATGCAATTTGTGCGACCCGATGTACA
GACAATATGCATGGGATTGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCG
CCGGAGCAAGTACCAAACGTCTAGCATTCCCTCACGCTTGGCGCCAATGA
GTTTTTTATTTGAGAGAAAAAAGAAGACTATGCCTTCGCCATATGAATTC
TTAATATTAAGTAATAATAGCATGGCACTTCGAATTCGATATGAAAATTG
TTAGTGTTTTTTTTTTTTCAAAATATTTGATTATGTATCGAAGCAGTAGT
ATGAGATAAAGAAGGGGTATTCCGAGTTTATCTTACCTATCGGAGGCCTA
TTG
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