CX298419

Overview
NameCX298419
Unique NameCX298419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12794 contig Ccv1_Contig12794:586..1342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 89/245 (36.33%), Postives = 128/245 (52.24%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY----SSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDKIRI-LVDPAALEK 737
            MG G+G+S HG +R+ TEKT+ AMPE  IGLFPDVG  Y   +    G +G  L +TG R+    D L AG+ T +V SG L  L++ L+A+       ++I  LL  Y      D E E  L   + +I S FS+  S+ +I+++LK+  S        +A + L+ + K +P SL LT +   + A+           L  V   EYR++       DF E VRAVL+DK +     PAALE+
Sbjct:  143 MGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPR--LSGKIGHLLALTGFRLK-GRDVLKAGIATHFVESGKLPELEKDLIAL--KSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSA-NSMEEIVQKLKQDGS-------PFATKQLEAINKMSPTSLKLTLRQLREGAT---------MSLQDVFTMEYRLSQACMRGHDFYEGVRAVLIDKDQSPRWKPAALEE 365          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.160e-24
Identity = 83/232 (35.78%), Postives = 124/232 (53.45%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ----ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG G+G+S HG++R+ TEK L AMPE  IGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  L  L+E LLA+       ++I ++L  Y ++ + +     +L +    I SCFS+  +V +IIE L++  SS       +A E L+ + K +P SL +T +   + +S           L  V+  EYR++       DF E VRAVL+DK
Sbjct:  144 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLK-GRDVYRAGIATHFVDSEKLAMLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSA-NTVEEIIENLQQDGSS-------FALEQLKVINKMSPTSLKITLRQLMEGSS---------KTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDK 353          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 81/232 (34.91%), Postives = 123/232 (53.02%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL----LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG G+G+S HG++R+ TE++L AMPE GIGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  L  L+E LLA+       +D+  +L  Y +  + +    ++    + +I SCFS+  +V QIIE L++  S        +A E ++ + K +P SL +T +   + +S           L  V+  EYR+        DF E VRAVL+DK
Sbjct:  143 MGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ--GKLGYFLALTGYRLK-GRDVHRAGIATHFVDSEKLRVLEEELLAL--KSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSA-NTVEQIIENLRQDGS-------PFAIEQMKVINKMSPTSLKITLRQLMEGSS---------KTLQEVLIMEYRITQACMEGHDFHEGVRAVLIDK 352          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 79/232 (34.05%), Postives = 120/232 (51.72%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL----LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG G+G+S HG++R+ TE++L AMPE GIGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  L  L+E LLA+       +D+  +L  Y +  +      ++    + +I SCFS+  +V QI+E L++  S        +A E ++ + K +P SL +T +            +     L  V+  EYR+        DF E VRAVL+DK
Sbjct:  143 MGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLK-GRDVHRAGIATHFVDSEKLHVLEEELLAL--KSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSA-NTVEQILENLRQDGS-------PFAMEQIKVINKMSPTSLKITLRQL---------MEGSTKTLQEVLTMEYRLTQACMEGHDFHEGVRAVLIDK 352          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 87/233 (37.34%), Postives = 123/233 (52.79%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVA-LLAKY--SSDPEGEAPLKLL--LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG G+G+S HG +R+ +EKTL AMPE  IGLFPDVG  Y   +    G +G YL +TG R+   SD   AG+ T +V S  L SL++ L+A+   + P ++ VA +L  Y   S    + P  L   + +I S FS   +V +I+E LK   SS       +A + LQ +   +P SL +T +   + AS           L  V+  EYR++       DF E VRAVL+DK
Sbjct:  143 MGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLT--GKLGLYLALTGFRLK-GSDVQKAGIATHFVESEKLSSLEQDLVAM---KSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSG-NTVEEIMENLKCDGSS-------FAMKQLQTLSTMSPTSLKITFRQLKEGAS---------MSLQEVLTMEYRLSQACMNGHDFYEGVRAVLIDK 352          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 81/231 (35.06%), Postives = 113/231 (48.92%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS---SEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG G+G+S HG++R+ TEKTL AMPE GIGLFPDVG  Y   +    G +G +L +TG R+    D    G+ T +V S  + SL++ L  V        D+  LL  Y      +A    +L + T       S  SV +I+E LKK  S+       +A +  + + K +P SL LT +   + A            L  V   EYR++       DF E VRAVL+DK
Sbjct:  140 MGGGVGLSVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQ--GKLGLFLALTGFRLK-GRDVQRVGVATHFVQSEKIESLEKDL--VDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSVEEIVENLKKDGSA-------FALKQAETLAKMSPTSLKLTFRQIEEGAR---------MSLQEVFMMEYRLSQACMNGHDFYEGVRAVLIDK 349          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 82/233 (35.19%), Postives = 126/233 (54.08%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL-----AKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG G+G+S HG++R+ TEK++ AMPE  IGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V    LG L+E LLA+   + P ++ +A +     AK  +D +    L+  + +I S FS+  +V QI++ L++  SS       +A E L+ + K +P SL +T +   + +S           L  V+  EYR++       DF E VRAVL+DK
Sbjct:  144 MGGGVGVSVHGQFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLK-GRDVYTAGIATHFVDFEKLGMLEEDLLAL---KSPSKENIADVLETYHAKSKTDQDKPFILEEHMDKINSWFSA-NTVEQIVDNLQQDGSS-------FALEQLKVIKKMSPTSLKITLRQLMEGSS---------KTLPEVLIMEYRLSQACMKGHDFHEGVRAVLIDK 353          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.159e-22
Identity = 84/232 (36.21%), Postives = 120/232 (51.72%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY--SSDPEGEAPLKLL--LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG G+G+S HG +R+ +E TL AMPE  IGLFPDVG  Y   + P  G +G YL +TG R+   SD   AG+ T +V S  + SL++ L+A+       +++  +L  Y   S    + P  L   L +I S FS+  SV  IIE L+   SS       +A + LQ +   +P SL +T +   + +S           L  V+  EYR++       DF E VRAVL+DK
Sbjct:  143 MGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLP--GKLGLYLALTGFRLK-GSDVQKAGIATHFVESEKIPSLEQDLVAMKCPS--KENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSA-SSVEAIIENLRCDGSS-------FALKQLQTLSTMSPTSLKITFRQLKEGSS---------MSLQEVLTMEYRLSQACMKGYDFYEGVRAVLIDK 352          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 73/230 (31.74%), Postives = 123/230 (53.48%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP-HQDIVALLAKYSSDPEGEA-PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDK 701
            MG GIG+S HG++R+ TE T+ AMPE GIG F DVG SY   + P   + G YL +TG ++   ++   AG+ T +V + ++ +L++    +   E+P  Q I ++L KY    +  +      L  I   F  + SV++I E+L+  ++S      +WA + L+ +   +P SL +  +   + A        +L  L+  ++ E+R++     + DF E VRA+LVDK
Sbjct:  139 MGGGIGLSVHGKFRVATENTVFAMPETGIGFFCDVGGSYFLPRLP--NNYGMYLALTGSKLK-GNNVYLAGVATHFVSNEHIQALEK---EIEECENPTSQTINSILTKYHDKSKSTSNEYNDNLGDIERIF-GKNSVKEIFEQLELLENS------EWAKQTLKTLKSVSPSSLMVVFEQMKQGA--------KLPSLAKCLEMEFRISQHFLEKPDFFEGVRALLVDK 347          
BLAST of CX298419 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 67/232 (28.88%), Postives = 109/232 (46.98%), Query Frame = 3
Query:   18 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE--DPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAESVRAVLVDKIR 707
            MG G G++ H  +RI  E T+ AMPE GIG F DV  S+  ++ P  G  G YLG+T  +I    D L  G+ T +VP      L++ L  +  S+    +  I+      SS P    P   ++  I  CF    +V  II  LK++ S+  +++A++A   ++ +   +P S+ +T +     A            +S    Y++ V+     + DF E V A L+ K +
Sbjct:  164 MGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLP--GYFGTYLGLT-SQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTP--DVMDVINKCFCKNDTV-DIIRALKEYASNT-SALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAK---------WSISEAFYYDHIVSYYMLKQPDFVEGVNAQLITKTK 379          
The following BLAST results are available for this feature:
BLAST of CX298419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HIBCH_CHICK6.800e-2536.333-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN1.160e-2435.783-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE2.584e-2434.913-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT2.857e-2334.053-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA8.312e-2337.343-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE8.312e-2335.063-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN1.418e-2235.193-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR3.159e-2236.213-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI3.861e-2031.743-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO4.884e-1528.883-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC06012A05SK RindPdig24 Citrus clementina cDNA clone C06012A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298419 ID=CX298419; Name=CX298419; organism=Citrus clementina; type=EST; length=754bp
GATTCGGCCGAGGTAACATGGGTTTTGGAATCGGCATATCCGGTCATGGT
CGCTACAGAATTGTAACAGAGAAAACTCTTCTAGCCATGCCAGAAAATGG
AATTGGCTTGTTCCCGGATGTTGGATTTTCATACATAGCAGCAAAAGGTC
CTGGAGGAGGATCTGTTGGTGCTTATCTTGGTATGACGGGAAAGAGAATT
TCCACACCTTCTGATGCACTCTTTGCTGGACTTGGAACGGATTATGTGCC
ATCGGGGAATTTAGGTTCACTGAAGGAGGCCCTTTTGGCAGTTACCTTTT
CCGAAGATCCGCATCAGGATATTGTAGCACTTTTGGCAAAATATAGCAGT
GACCCTGAGGGTGAAGCCCCACTGAAGCTTCTTTTGCCTCAAATTACTTC
ATGCTTCAGTTCAGAAAAGTCAGTTAGGCAGATAATTGAAGAGCTAAAGA
AACATCAATCAAGTGCCGAGACTTCAGTGGCACAATGGGCTGATGAGGCC
CTTCAAGGAATGGGGAAAGGTGCTCCATTTTCTCTTTGCTTAACACAAAA
GTACTTCTCTAAAGTTGCATCAGCACATGGAAAAACTGACAATGAATTAT
CAAAGCTAAGCGGGGTAATGAAATATGAATATCGAGTTGCCTTAAGATCT
TCTTTGCGAAGTGATTTTGCTGAAAGTGTTCGAGCAGTCTTGGTGGACAA
GATCAGAATCCTAGTGGACCCAGCAGCTTTGGAGAAGTCACAAGTGAAGT
GAGC
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