CX298420

Overview
NameCX298420
Unique NameCX298420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig921 contig Ccv1_Contig921:101..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.188e-85
Identity = 147/239 (61.51%), Postives = 185/239 (77.41%), Query Frame = 2
Query:    2 RPEQDAPVISDNTLI-LKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFE--NGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVTL 709
            R +QD   + D+  + ++ P+IDM+              LDFAC+EWGFFQLVNHG+  + +DKVK EIQ+FFNL MEEKKK+WQ P E+EGFGQAFVVSE+Q+LDW DLFF T  PV LRKPHLFPKLP   RDTLE+YS+EV ++A  LI++MA+ L IK EE+ + F+  + +QSMRMNYYPPCPQP +V+GLTPHSDS+ LT+L+Q+N+ EGLQIKKDGKW PV+PLPNAFIV +
Sbjct:   35 RSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNI 273          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.949e-47
Identity = 97/234 (41.45%), Postives = 138/234 (58.97%), Query Frame = 2
Query:    8 EQDAPVISDNTLILKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVTL 709
            E D  V  DN+L  + PVID+             A    AC +WGFFQL+NHGV   +++K+K + ++FF L  +EK  Y Q P  +EG+GQAFV SEEQ+LDW D+ F+ T PV  R    +P  P S R+T+E YS E+  +AM L   MAK L ++ E + +     + +      P     G+ +GL+PHSD+  LT+L+Q+NE  GL IKKD KW P++P+  AF+V +
Sbjct:   38 EHDDVVPIDNSL--EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNI 268          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 72/240 (30.00%), Postives = 123/240 (51.25%), Query Frame = 2
Query:    2 RPEQDAPVISDNTLILKFPVIDMQXXXXXXXXXXXXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDG--KWFPVRPLPNAFIVTL 709
            R E + P ++ N    + P+I +                 +  AC +WG FQ+V+HG+   L+ ++ +  +EFF L  EEK +Y    G+  GF  + V+  +  +DW +     + P++ R    +PK P   R T EVYS ++  L   L+  +++ + ++  ++ +   +  Q + +NYYP CPQP   +G+  H+D   +TILLQ +   GLQ  +DG   W  V+P+  AF+V L
Sbjct:   21 RDEDERPKVAYNQFSNEIPIISLAGLDDDSDGRRPEICRKIVKACEDWGIFQVVDHGIDSGLISEMTRLSREFFALPAEEKLEYDTTGGKRGGFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQPDLTLGVRRHTDPGTITILLQ-DMVGGLQATRDGGKTWITVQPVEGAFVVNL 259          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 70/198 (35.35%), Postives = 108/198 (54.55%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            A  EWG   LVNHG+S  L+++VK   + FFNL MEEK+KY   Q  G++ G+G     +   +L+W D FF    P   R   ++PK P         YS ++ +LA  ++S ++  L +++  + +     E  L   ++NYYP CPQP   +G+  H+D  ALT +L  N   GLQ+  +GKW   + +PN+ I+
Sbjct:   79 AAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPNSIIM 275          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 65/198 (32.83%), Postives = 109/198 (55.05%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            A  +WG   L+NHG+   L+++VKK  +EFF+LS+EEK+KY   Q  G+++G+G     +   +L+W D FF    P   R   ++PK P    +    Y+  +  LA  +   ++  L ++ + + +     E  L  M++NYYP CPQP   +G+  H+D  ALT +L  N   GLQ+  +GKW   + +P++ ++
Sbjct:   73 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVM 269          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 75/240 (31.25%), Postives = 126/240 (52.50%), Query Frame = 2
Query:    2 RPEQDAPVISD-NTLILKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFF-NLSMEEKKKYWQYPG--EVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFF--ENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            R E + P  +  + ++L+ PVID++              +  A +EWG FQL+NHG+    +  ++K  +EFF ++  EEK+   + PG  ++EG+G +     E +  W D  F    P        +PK PPS R+  E Y   +  +   +   ++  L ++  E+ E    +  +  +++NYYPPCP+P   +G+  H+D   +TIL+  NE +GLQ+ KDG W+ V+ +PNA IV
Sbjct:   37 RSENEQPAATTLHGVVLQVPVIDLRDPDENKMVKL----IADASKEWGIFQLINHGIPDEAIADLQKVGKEFFEHVPQEEKELIAKTPGSNDIEGYGTSLQKEVEGKKGWVDHLFHKIWPPSAVNYRYWPKNPPSYREANEEYGKRMREVVDRIFKSLSLGLGLEGHEMIEAAGGDEIVYLLKINYYPPCPRPDLALGVVAHTDMSYITILVP-NEVQGLQVFKDGHWYDVKYIPNALIV 271          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 75/239 (31.38%), Postives = 125/239 (52.30%), Query Frame = 2
Query:    2 RPEQDAPVISD-NTLILKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPG--EVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFF--ENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            R E + PVIS  + ++L+ PVID+               +  A +EWG FQ+VNHG+   ++ K+++  + FF L  EEK+   +  G   +EG+G       + +  W D  F    P        +PK PP+ R+  E Y+  +  +  NL   ++  L ++    ++    ++ +  M++NYYPPCP+P   +G+  H+D  A+T+L+  NE  GLQ+ KDG W+  + +PNA IV
Sbjct:   25 RSENEQPVISTVHGVVLEVPVIDLSDSDEKKIVGL----VSEASKEWGIFQVVNHGIPNEVIRKLQEVGKHFFELPQEEKELIAKPEGSQSIEGYGTRLQKEVDGKKGWVDHLFHKIWPPSAINYQFWPKNPPAYREANEEYAKRLQLVVDNLFKYLSLGLDLEPNSFKDGAGGDDLVYLMKINYYPPCPRPDLALGVA-HTDMSAITVLVP-NEVPGLQVYKDGHWYDCKYIPNALIV 257          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: FL3H_PETCR (Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 73/240 (30.42%), Postives = 123/240 (51.25%), Query Frame = 2
Query:    2 RPEQDAPVISDNTLILKFPVIDMQXXXXXXXXXXXXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDG--KWFPVRPLPNAFIVTL 709
            R E + P I+ N    + PVI +                 +  AC +WG FQ+V+HG+ + L+ ++ +  ++FF L  EEK ++    G+  GF  +  +  E   DW ++    + P+  R    +P  P   R   E+YS E+ ALA  L+  +++ + ++ E + +   +  Q + +NYYP CPQP   +GL  H+D   +T+LLQ ++  GLQ  +DG   W  V+P+  AF+V L
Sbjct:   21 RDEDERPKIAYNKFSDEIPVISLAGIDDDSVDKRSQICRKIVEACEDWGIFQVVDHGIDIDLISEMTRLARQFFALPAEEKLRFDMTGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIQARDYSRWPDKPEGWRSITEMYSDELMALACKLLEVLSEAMGLEKEGLTKACVDMDQKVIVNYYPKCPQPNLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDGGKTWITVQPVEGAFVVNL 259          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 68/198 (34.34%), Postives = 109/198 (55.05%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            A  EWG   LVNHG+S  L+++VK   + FF+  +EEK+KY   Q  G V+G+G     S   +L+W D FF    P   R   ++PK P         Y+ ++ ALA  +++ ++  L +++  + +     E+ L  M++NYYP CPQP   +G+  H+D  ALT +L  N   GLQ+  +G+W   + +PN+ I+
Sbjct:   77 AAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGQWVTAKCVPNSIIM 273          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27
Identity = 65/198 (32.83%), Postives = 109/198 (55.05%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            A  +WG   LVNHG+S  L+DKV+K  + FF+L +E+K+KY   Q  G+++G+G     +   +L+W D FF    P   R   ++P+ P    +    Y+ ++  LA  ++  ++  L + +  + +     E  L  M++NYYP CPQP   +G+  H+D  ALT +L  N   GLQ+  +GKW   + +PN+ ++
Sbjct:   77 AAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPNSIVM 273          
The following BLAST results are available for this feature:
BLAST of CX298420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
SRG1_ARATH7.188e-8561.51Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA5.949e-4741.45S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
FNSI_PETCR1.627e-2830.00Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
LDOX_VITVI3.626e-2835.35Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_ARATH1.055e-2732.83Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
FLS_PETHY1.055e-2731.25Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_EUSGR1.055e-2731.38Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
FL3H_PETCR1.055e-2730.42Flavanone 3-dioxygenase OS=Petroselinum crispum GN... [more]
LDOX_PETHY2.350e-2734.34Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
LDOX_MALDO4.009e-2732.83Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]

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Properties
Property NameValue
Genbank descriptionC06012A06SK RindPdig24 Citrus clementina cDNA clone C06012A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298420 ID=CX298420; Name=CX298420; organism=Citrus clementina; type=EST; length=727bp
ACGTCCTGAGCAAGATGCACCTGTCATTTCTGACAATACTTTGATCTTAA
AGTTTCCAGTTATTGACATGCAGAGCTTGCTTTCTGAAGAATCAGTGGAT
TCTGAATTGGCCAACCTTGACTTCGCTTGCAGAGAATGGGGTTTTTTCCA
GTTGGTCAATCATGGAGTGAGTTTGGCGTTAGTAGACAAAGTGAAGAAAG
AGATACAGGAATTCTTCAATCTCAGCATGGAAGAGAAGAAAAAATATTGG
CAGTATCCCGGAGAAGTAGAAGGATTTGGACAAGCCTTTGTTGTATCTGA
GGAACAAAGGCTTGACTGGGGAGACCTGTTCTTCATGACCACTCTTCCTG
TCCATCTGAGGAAACCCCACTTGTTTCCTAAGCTCCCTCCTTCTCTCAGG
GATACGTTGGAAGTTTACTCAACGGAAGTAAATGCTCTAGCGATGAATTT
AATATCGAGAATGGCAAAAGTCTTACATATCAAGGATGAGGAAGTGAGAG
AATTCTTCGAAAATGGATTGCAATCAATGAGGATGAACTATTATCCTCCA
TGTCCTCAACCGGGGAAAGTTATGGGCCTTACACCCCATTCTGATAGCAT
TGCACTTACCATTCTCCTACAAATCAATGAAGCTGAAGGTCTCCAGATTA
AGAAGGATGGAAAGTGGTTTCCTGTTCGGCCGCTGCCAAATGCTTTTATT
GTCACATTGGAGACATGCTGGAGGTAA
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