CX298421

Overview
NameCX298421
Unique NameCX298421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig747 contig Ccv1_Contig747:1..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.358e-46
Identity = 92/138 (66.67%), Postives = 109/138 (78.99%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            GISLGAS+SP T K L AAL FHQ FEG+GLGGCI Q  F    + I+++FFS+TTPV        SS YD++SPTALIV+G+ NAA+AGILIYMSLVD LAADFM+PKMQ+N RLQ  A++SLL+GAG MSLLAKWA
Sbjct:  223 GISLGASQSPDTAKALFAALMFHQCFEGLGLGGCIAQGNFNCMSITIMSIFFSVTTPVGIAVGMAISSSYDDSSPTALIVQGVLNAASAGILIYMSLVDFLAADFMHPKMQSNTRLQIMAHISLLVGAGVMSLLAKWA 360          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.104e-44
Identity = 89/138 (64.49%), Postives = 107/138 (77.54%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            GISLGAS+SP   K L  AL FHQ FEG+GLGGCI Q KFK   V I++ FF++TTP+        ++ YDE+SPTALIV+G+ NAA+AGILIYMSLVDLLAADF +PKMQ+N  LQ  A+++LLLGAG MSLLAKWA
Sbjct:  202 GISLGASQSPDAAKALFIALMFHQCFEGLGLGGCIAQGKFKCLSVTIMSTFFAITTPIGIVVGMGIANSYDESSPTALIVQGVLNAASAGILIYMSLVDLLAADFTHPKMQSNTGLQIMAHIALLLGAGLMSLLAKWA 339          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.975e-39
Identity = 85/140 (60.71%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSV--YDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            GISLGAS+S  TIKPL+AAL+FHQFFEG+GLGGCI+ A  KS+   ++A FFS+T P+        SS   Y + S  A++VEG+ NAA+AGILIYMSLVDLLA DFMNP++Q+N  L   A +SL+LGAG MSLLA WA
Sbjct:  216 GISLGASQSIDTIKPLMAALSFHQFFEGLGLGGCISLADMKSKSTVLMATFFSVTAPLGIGIGLGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLHLAAYLSLVLGAGSMSLLAIWA 355          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.192e-39
Identity = 78/138 (56.52%), Postives = 103/138 (74.64%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            GISLGAS S  TIKPL+AA+TFHQ FEG GLGGCI++AKF+ + + ++ +FF+LT P+        + +Y+ENSP AL V G  NA A+GILIYM+LVDL+A  FMN K Q++ ++Q   +VSL++GAG MSLLA WA
Sbjct:  218 GISLGASPSVSTIKPLIAAITFHQLFEGFGLGGCISEAKFRVKKIWVMLMFFALTAPIGIGIGIGVAEIYNENSPMALKVSGFLNATASGILIYMALVDLVAPLFMNQKTQSSMKIQVACSVSLVVGAGLMSLLAIWA 355          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.365e-38
Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            G+SLG S+SP TI+PL+AAL+FHQFFEG  LGGCI+QA+F+++   I+A FF+LTTP+        +S ++ +SP AL+ EGI ++ +AGIL+YM+LVDL+AADF++ +M  N RLQ  + V L LGAG MS LA WA
Sbjct:  237 GLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPLGIGIGTAVASSFNSHSPGALVTEGILDSLSAGILVYMALVDLIAADFLSKRMSCNLRLQVVSYVMLFLGAGLMSALAIWA 374          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 9.792e-38
Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            G+SLG S+SP TI+PL+AAL+FHQFFEG  LGGCI+QA+F+++   I+A FF+LTTP+        +S ++ +S  AL+ EGI ++ +AGIL+YM+LVDL+AADF++ KM+ N RLQ  + V L LGAG MS LA WA
Sbjct:  252 GLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPIGIGIGTAVASSFNSHSVGALVTEGILDSLSAGILVYMALVDLIAADFLSTKMRCNFRLQIVSYVMLFLGAGLMSSLAIWA 389          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.347e-37
Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            G+SLGA+    TIK L+AAL FHQ FEGMGLGGCI QA++ +    ++A FF++TTP         S+VY +NSP ALI  G+ NA +AG+LIYM+LVDLLAA+FM PK+Q + ++QF   ++ LLG G MS++AKWA
Sbjct:  202 GLSLGATSDTCTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTTPFGIALGIALSTVYQDNSPKALITVGLLNACSAGLLIYMALVDLLAAEFMGPKLQGSIKMQFKCLIAALLGCGGMSIIAKWA 339          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 76/138 (55.07%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            G+S+G + +  TIK LVAAL FHQ FEGMGLGGCI QA++     A++A FF++TTP         S  Y ENSP +LI  G+ NA++AG+LIYM+LVDLLAADFM  KMQ + +LQ  +  ++LLGAG MS++AKWA
Sbjct:  227 GLSVGDTNNTCTIKGLVAALCFHQMFEGMGLGGCILQAEYGWVKKAVMAFFFAVTTPFGVVLGMALSKTYKENSPESLITVGLLNASSAGLLIYMALVDLLAADFMGQKMQRSIKLQLKSYAAVLLGAGGMSVMAKWA 364          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.667e-35
Identity = 76/138 (55.07%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            G+SLGA+    TIK L+AAL FHQ FEGMGLGGCI QA++ +    ++A FF++TTP         SSVY +NSPTALI  G+ NA +AG+LIYM+LVDLLAA+FM   +Q + +LQ     + LLG G MS+LAKWA
Sbjct:  210 GLSLGATNDTCTIKGLIAALCFHQMFEGMGLGGCILQAEYTNVKKFVMAFFFAVTTPSGIALGIALSSVYKDNSPTALITVGLLNACSAGLLIYMALVDLLAAEFMGSMLQRSVKLQLNCFGAALLGCGGMSVLAKWA 347          
BLAST of CX298421 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.323e-34
Identity = 71/138 (51.45%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    4 GISLGASESPKTIKPLVAALTFHQFFEGMGLGGCITQAKFKSRGVAILALFFSLTTPVXXXXXXXXSSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 417
            GISLG S SP TI+PL+ AL+FHQFFEG  LGGC+ +A+   RG A++A FF++TTP+        +S Y+  S  AL+ EG+ ++ +AGIL+YM+LVDL+AADF++ KM  + R+Q  +   L LGAG MS LA WA
Sbjct:  207 GISLGVSHSPCTIRPLLLALSFHQFFEGFALGGCVAEARLTPRGSAMMAFFFAITTPIGVAVGTAIASSYNSYSVAALVAEGVLDSLSAGILVYMALVDLIAADFLSKKMSVDFRVQVVSYCFLFLGAGMMSALAIWA 344          
The following BLAST results are available for this feature:
BLAST of CX298421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ZIP5_ARATH3.358e-4666.67Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
ZIP3_ARATH4.104e-4464.49Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP1_ARATH3.975e-3960.71Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP12_ARATH5.192e-3956.52Probable zinc transporter 12 OS=Arabidopsis thalia... [more]
ZIP4_ARATH3.365e-3855.07Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH9.792e-3855.07Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
IRT1_ARATH6.347e-3754.35Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
ZIP10_ARATH2.042e-3555.07Probable zinc transporter 10 OS=Arabidopsis thalia... [more]
ZIP8_ARATH2.667e-3555.07Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
ZIP9_ARATH1.323e-3451.45Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]

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Properties
Property NameValue
Genbank descriptionC06012A07SK RindPdig24 Citrus clementina cDNA clone C06012A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298421 ID=CX298421; Name=CX298421; organism=Citrus clementina; type=EST; length=521bp
GAGGGAATTTCCTTGGGAGCTTCTGAGAGTCCAAAAACCATTAAGCCTTT
GGTTGCAGCGTTGACTTTTCATCAATTCTTTGAAGGAATGGGTCTTGGTG
GTTGCATTACGCAGGCAAAATTCAAGTCTCGAGGAGTTGCAATATTGGCC
TTGTTCTTCTCTTTGACGACCCCAGTTGGGATAGCAATAGGCATTGGAAT
ATCAAGTGTTTATGACGAAAATAGCCCCACCGCTCTTATTGTTGAAGGAA
TATTCAATGCAGCAGCAGCCGGAATCCTAATATACATGTCCTTGGTGGAT
CTTCTTGCTGCAGATTTTATGAATCCAAAGATGCAAACCAATAAAAGGCT
TCAGTTTGGAGCAAATGTTTCTCTTCTTTTAGGCGCTGGTTGCATGTCTT
TGTTAGCCAAATGGGCTTAAAATTCATTCAGATTTTGTCTACAATTTTTC
TTCATCCAATAGTTTAATTAATTTGCGGCAGTTTTTGTACGGAAAANAAA
AAAAAAAAAAAAAAAAAAAAA
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