CX298422

Overview
NameCX298422
Unique NameCX298422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 65/135 (48.15%), Postives = 93/135 (68.89%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPND--PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G  GLYKGL A+ LGV P +AI+F+ YE+L+   +++ P D  PTV+ SL  G++SG  + T T+PIDL+RRR+Q++G GG+  +Y NG    FR II+ EG+ GLY G++P Y KV+P + I F  YE +K +L
Sbjct:  293 GVAGLYKGLFASALGVAPYVAINFTTYENLK---KTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILY-NGTFDAFRKIIRDEGVLGLYNGMIPCYLKVIPAISISFCVYEVMKKIL 423          

HSP 2 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVS---LACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            GF+G +KG G  ++ + P  AI F  YE  ++F  +   ND T + +   L  G  +G+ S   T+P+DL+R R+ ++  G +     NG+  T + II+ EG+ GLY+G+      V P V I F TYE LK
Sbjct:  197 GFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNN--NDQTHLTTYENLFVGGAAGVTSLLCTYPLDLIRSRLTVQVFGNKY----NGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLK 323          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPND---PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            GF   YKG    LLG+ P   I  +VYE L+S W      D   P V+V L CG+LS      A++P+ LVR RMQ +     A   N  ++G FR II  EGL GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  337 GFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGAPQLN--MVGLFRRIISKEGLPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 470          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPND---PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            GF   YKG    LLG+ P   I  +VYE L+S+W      D   P VMV L+CG+LS      A++P+ LVR RMQ +     A   +  ++G F+ I+  EG+ GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  337 GFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQLASYPLALVRTRMQAQATVEGAPQLS--MVGLFQRIVSKEGVSGLYRGITPNFMKVLPAVGISYVVYENMKQTL 470          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 58/136 (42.65%), Postives = 76/136 (55.88%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPND---PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G    YKG    LLG+ P   I  +VYE L+S+W      D   P VMV L CG+LS      A++P+ LVR RMQ +     +   N  ++G FR II  EG+ GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  339 GLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSPQLN--MVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 472          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 58/136 (42.65%), Postives = 76/136 (55.88%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPND---PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G    YKG    LLG+ P   I  +VYE L+S W      D   P VMV L CG+LS      A++P+ LVR RMQ +    ++   N  ++G FR I+  EGL GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  339 GMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMIEKSPQLN--MVGLFRRILSKEGLPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 472          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSY--RPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVPT 415
            G    YKG    LLG+ P   I  +VYESL+S +  Y     +P V+  LACG+ S      A++P+ LVR R+Q      +     + ++G F++I+Q+EG  GLYRGI P + KV+P V I ++ YE ++  L +  T
Sbjct:  392 GIKCFYKGYLPNLLGIIPYAGIDLTVYESLKSMYTKYYTEHTEPGVLALLACGTCSSTCGQLASYPLALVRTRLQARAISPKNSTQPDTMVGQFKHILQTEGFTGLYRGITPNFMKVIPAVSISYVVYEKVRKQLGATMT 531          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = 2
Query:   17 YKGLGATLLGVGPSIAISFSVYESLRSFW---QSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGA--GGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            Y+G    +LG+ P   I  +VYE+L+++W    S+   DP ++V LACG++S      A++P+ LVR RMQ + +  GG        +LG  R+I+  EG++GLYRGI P + KV+P V I ++ YE +K  L
Sbjct:  335 YRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILVLLACGTISSTCGQIASYPLALVRTRMQAQASIEGGPQL----SMLGLLRHILSQEGMRGLYRGIAPNFMKVIPAVSISYVVYENMKQAL 463          

HSP 2 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVS--LACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            G   L++G G  +L + P  AI F  YE ++   ++      T+ V      GSL+G  + T  +P+++++ R+ L   G        GLL   R I++ EG +  YRG LP    ++P  GI    YETLK
Sbjct:  237 GIRSLWRGNGINVLKIAPESAIKFMAYEQIK---RAILGQQETLHVQERFVAGSLAGATAQTIIYPMEVLKTRLTLRRTG-----QYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLK 360          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 56/137 (40.88%), Postives = 81/137 (59.12%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFW-QSYRPN--DPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGA-GGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G    YKG    +LG+ P   I  +VYE+L++ W Q Y  N  DP V V LACG++S      A++P+ LVR RMQ + +  G   V  + L   F++I+++EG  GLYRG+ P + KV+P V I ++ YE LK+ L
Sbjct:  331 GVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSL---FKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITL 464          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 55/137 (40.15%), Postives = 83/137 (60.58%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFW-QSYRPN--DPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAG-GRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G    YKG    +LG+ P   I  +VYE+L++ W Q +  +  DP V V LACG++S      A++P+ LVR RMQ + +  G  ++  +GL   FR+I+++EG  GLYRG+ P + KV+P V I ++ YE LK+ L
Sbjct:  331 GMTAFYKGYIPNMLGIIPYAGIDLAVYETLKNSWLQRFATDSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASQEGSPQMTMSGL---FRHIVRTEGAIGLYRGLAPNFMKVIPAVSISYVVYENLKITL 464          

HSP 2 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 40/132 (30.30%), Postives = 69/132 (52.27%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPT--VMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            G   L++G G  +L + P  AI F  YE ++    S   N  T  ++  L  GSL+G  + ++ +P+++++ R+ L    GR   Y+ G+    ++I + EG+   Y+G +P    ++P  GI    YETLK
Sbjct:  238 GLRSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGS---NQETLGILERLVSGSLAGAIAQSSIYPMEVLKTRLAL----GRTGQYS-GIADCAKHIFKKEGMTAFYKGYIPNMLGIIPYAGIDLAVYETLK 361          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFW-QSYRPN--DPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G    YKG    +LG+ P   I  +VYE+L++ W Q Y  +  DP V V LACG++S      A++P+ LVR RMQ E +   A       L  F++I+++EG  GLYRG+ P + KV+P V I ++ YE LK+ L
Sbjct:  375 GVSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAEASVEGAPQMTMSKL--FKHIVKTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKLTL 508          
The following BLAST results are available for this feature:
BLAST of CX298422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
MCFB_DICDI7.077e-2948.15Mitochondrial substrate carrier family protein B O... [more]
SCMC1_RABIT4.912e-2244.12Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE1.094e-2141.91Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN1.429e-2142.65Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN1.429e-2142.65Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEEL4.159e-2137.14Probable calcium-binding mitochondrial carrier F17... [more]
SCMC3_HUMAN1.210e-2039.10Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN2.064e-2040.88Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2B_DANRE2.064e-2040.15Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR3.520e-2040.44Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC06012A08SK RindPdig24 Citrus clementina cDNA clone C06012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298422 ID=CX298422; Name=CX298422; organism=Citrus clementina; type=EST; length=716bp
AGGATTTTTGGGCTTGTATAAAGGACTTGGAGCGACATTATTGGGTGTTG
GACCTAGTATAGCAATAAGTTTTTCTGTCTATGAGTCTCTCAGATCTTTT
TGGCAGTCTTACAGGCCCAATGATCCCACTGTCATGGTCAGCCTTGCATG
CGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACTTTTCCTATTGATC
TTGTGAGGAGAAGAATGCAGTTAGAAGGGGCCGGTGGTCGAGCTCGTGTC
TACAATAATGGGTTGTTAGGGACTTTTCGGTACATAATTCAGTCTGAAGG
TCTGCAGGGCTTGTATAGAGGCATTTTGCCAGAATATTACAAGGTGGTTC
CTGGTGTTGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTTTA
TCAAGTGTTCCTACCAGTTTTTAGTTACTTATCGCCGGCATATGTTATGC
TATAACATGTCCATGAGTTCATAAATTATTAAACCCACTTTGACATGAAA
GAAAATTCTGTTAGTTTGGATATACTAGGCAGCTAGAACAAATGTCTGGC
ATTTGCTGAGAGTAACAATGGTGGTAAATTTTGTCGTTGCCACTATATGA
TTTCCCCTTTTTCCTTCATTTCGGTCGGATAATGTATAGGTGGTTAGAAC
TGCGAGAGTGATATCAGTGTATCCTGTTTCACTGATTCGAGTCTGACATT
TCAATGTGTAGCATCA
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