CX298434

Overview
NameCX298434
Unique NameCX298434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig879 contig Ccv1_Contig879:372..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: S6PD_MALDO (NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica GN=S6PDH PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.524e-76
Identity = 133/199 (66.83%), Postives = 164/199 (82.41%), Query Frame = 1
Query:   25 PQQHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQPARFWGIDLFA 621
            P +H  +G T S L  D VL+ID TISL+ TW  ME  VS+GLVRSIG+SNY++FLTRDCLAYSK+KP V+QFETHPYFQRDSLVKFC KHG+  TAHTPLGGA AN + FG+VS LDDPVL  +A+KY ++VAQI LRWGIQR TAVIPK+SK++RL+EN +V +F+LS EDM +I SIDRKYRT+ P++ WG+D++A
Sbjct:  112 PTKHNAIGKTASLLGEDKVLDIDVTISLQQTWEGMEKTVSLGLVRSIGLSNYELFLTRDCLAYSKIKPAVSQFETHPYFQRDSLVKFCMKHGVLPTAHTPLGGAAANKDMFGSVSPLDDPVLNDVAKKYGKSVAQICLRWGIQRKTAVIPKSSKIQRLKENLEVLEFQLSDEDMQLIYSIDRKYRTSLPSKTWGLDVYA 310          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ALRB_DICDI (Aldose reductase B OS=Dictyostelium discoideum GN=alrB PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.867e-38
Identity = 81/190 (42.63%), Postives = 114/190 (60.00%), Query Frame = 1
Query:   49 TTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQPARFWGIDLF 618
            TT    D+DG   +   +S+  TW  ME LV  GLV+SIG+SN+++    D L Y+K+KP +NQ E HPY  + +L  FC ++GI +TA++PLG         G    L +  LK +A+K+ +TVA ++ +W  QR    IPK+S   R+ ENF +FDF+LS EDMD I S++   RT  PA F  I LF
Sbjct:  130 TTQPLRDSDGE-PVLAAVSIRETWQEMEKLVEYGLVKSIGVSNFNVQNLVDLLTYAKIKPAINQVEVHPYLSQPNLKYFCDRYGIVLTAYSPLGQ--------GKCDLLSNETLKSIADKHNKTVANVIFKWLNQRGIVTIPKSSNPARIIENFNIFDFQLSNEDMDKINSLNSNLRTCTPANFCKIPLF 310          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ALRA_DICDI (Aldose reductase A OS=Dictyostelium discoideum GN=alrA PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 72/174 (41.38%), Postives = 110/174 (63.22%), Query Frame = 1
Query:  100 ISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLG-GAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQPARFWGIDLF 618
            +S+  TW  ME LV  GLV+SIG+SN+++    + L+Y+++KP  NQ E HP+  +  L KFC KH I +TA++PLG GA  + E  G +           A+KY +T+  ++ +W IQ+N +VIPK+S   R+ ENF +F+FE+ + DM  +  +D+  RT  PA+FWG+ LF
Sbjct:  134 VSIRETWEEMEKLVDAGLVKSIGLSNFNVQGLMEVLSYARIKPAANQVELHPFLSQPELKKFCDKHNIHLTAYSPLGNGAFVDNEEVGAI-----------AKKYNKTIPNVLCKWAIQKNFSVIPKSSTPSRVAENFDLFNFEIEEADMLFLDKMDKNLRTCDPAKFWGVPLF 296          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ALRC_DICDI (Aldose reductase C OS=Dictyostelium discoideum GN=alrC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 70/173 (40.46%), Postives = 106/173 (61.27%), Query Frame = 1
Query:  100 ISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQPARFWGIDLF 618
            +S+  TW  ME LV +GLV+SIG+SN+++    D L Y+K+KPVVNQ E HPY  +  L ++C K+ I + A++PLG         G      + +LK +A KYK++VA ++ +W  QR  A IPK+    R+ ENF +FDF+LS +D++ I S++   RT  P  F+G   +
Sbjct:  154 VSIRETWQEMEKLVELGLVKSIGVSNFNVQNLVDLLTYAKIKPVVNQVEIHPYLTQFKLQEYCDKYEIKLVAYSPLGQ--------GKCDFFSNKILKSIAGKYKKSVANVIFKWLNQRGIAAIPKSGNHSRIIENFNIFDFQLSNDDIEKINSLNANIRTCSPITFFGTPFY 318          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ALDR_PIG (Aldose reductase OS=Sus scrofa GN=AKR1B1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 1
Query:   64 LDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYS--KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            LD DG +  D +  +ET W AME+LV  GLV++IG+SN++       L     K KP VNQ E HPY  ++ L+++C+  GI VTA++PLG            S L+DP +K +A KY +T AQ+++R+ +QRN  VIPK+   ER+ ENF+VFDFELS EDM+ + S +R +R
Sbjct:  125 LDGDGNVVPDESDFVET-WEAMEELVDEGLVKAIGVSNFNHLQVEKILNKPGLKYKPAVNQIEVHPYLTQEKLIEYCKSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKYNKTTAQVLIRFPMQRNLIVIPKSVTPERIAENFQVFDFELSPEDMNTLLSYNRNWR 297          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ALDR_BOVIN (Aldose reductase OS=Bos taurus GN=AKR1B1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.595e-34
Identity = 78/174 (44.83%), Postives = 109/174 (62.64%), Query Frame = 1
Query:   64 LDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYS--KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            LD DG + I +      TW AME+LV  GLV++IG+SN++       L     K KP VNQ E HPY  ++ L+++C   GI VTA++PLG            S L+DP +K +A+KY +T AQ+++R+ IQRN  VIPK+   ER+ ENF+VFDFEL KEDM+ + S +R +R
Sbjct:  124 LDEDGNV-IPSEKDFVDTWTAMEELVDEGLVKAIGVSNFNHLQVEKILNKPGLKYKPAVNQIECHPYLTQEKLIQYCNSKGIVVTAYSPLGSPDRPWAKPEDPSILEDPRIKAIADKYNKTTAQVLIRFPIQRNLIVIPKSVTPERIAENFQVFDFELDKEDMNTLLSYNRDWR 296          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: AKCL2_PIG (1,5-anhydro-D-fructose reductase OS=Sus scrofa GN=AKR1E2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 79/180 (43.89%), Postives = 112/180 (62.22%), Query Frame = 1
Query:   46 GTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYS--KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            G  D  +D  G++    T  L+T W AMEDLV  GLVR+IG+SN++       L     +VKPV NQ E HPY  +  L+ FCQ   + VTA+ PLGG+         V  L+DPV++ +A+K+ ++ AQI++R+ IQRN  VIPK+   +R+ ENF+VFDFELS++DM  +  +DR  R
Sbjct:  110 GEVDLPVDRSGMIVASNTDFLDT-WEAMEDLVIEGLVRAIGVSNFNHEQLERLLNKPNLRVKPVTNQIECHPYLTQKKLISFCQSRNVSVTAYRPLGGSSEG------VPLLEDPVIQTIAQKHGKSAAQILIRFQIQRNVIVIPKSVNPKRILENFQVFDFELSEQDMTDLLGLDRNLR 282          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ALDR_HUMAN (Aldose reductase OS=Homo sapiens GN=AKR1B1 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/178 (45.51%), Postives = 112/178 (62.92%), Query Frame = 1
Query:   64 LDADG-VLEIDTTISLETTWHAMEDLVSMGLVRSIGISNY-----DIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            LD  G V+  DT I    TW AME+LV  GLV++IGISN+     ++ L +  L Y   KP VNQ E HPY  ++ L+++CQ  GI VTA++PLG            S L+DP +K +A K+ +T AQ+++R+ +QRN  VIPK+   ER+ ENFKVFDFELS +DM  + S +R +R
Sbjct:  125 LDESGNVVPSDTNIL--DTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKY---KPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWR 297          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ALDR_RABIT (Aldose reductase OS=Oryctolagus cuniculus GN=AKR1B1 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 78/174 (44.83%), Postives = 108/174 (62.07%), Query Frame = 1
Query:   64 LDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYS--KVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            LDA G +    T  L+T W AME LV  GLV+SIG+SN++       L     K KP VNQ E HPY  ++ L+++C   GI VTA++PLG            S L+DP +K +A+K+K+T AQ+++R+ +QRN  VIPK+    R+ ENF+VFDFELS EDM  + S +R +R
Sbjct:  125 LDAAGNVIPSDTDFLDT-WEAMEGLVDEGLVKSIGVSNFNHLQIERILNKPGLKYKPAVNQIECHPYLTQEKLIQYCHSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIADKHKKTTAQVLIRFPMQRNLVVIPKSVTPARIAENFQVFDFELSSEDMTTLLSYNRNWR 297          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: A1A1A_DANRE (Alcohol dehydrogenase [NADP+] A OS=Danio rerio GN=akr1a1a PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = 1
Query:   73 DGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            DG ++ D T     TW AME LV  GL ++IG+SN++     D L+ +K KPVVNQ E HPY  +  LV  C    + VTA++PLG         G    LDDP + G+A+ Y +T AQ+++RW IQR    IPK+    R+++N +VFDF+LS EDM +I+S +R  R
Sbjct:  129 DGTIQYDDT-HYRDTWAAMEKLVDQGLAKAIGLSNFNAKQIDDILSIAKHKPVVNQVECHPYLVQAELVSHCWSRNLTVTAYSPLGSPDRPWVTPGEALLLDDPRVVGIAKSYNKTPAQVIIRWHIQRGVVCIPKSVTPSRIKQNIEVFDFKLSDEDMRLIESFNRNER 296          
The following BLAST results are available for this feature:
BLAST of CX298434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
S6PD_MALDO4.524e-7666.83NADP-dependent D-sorbitol-6-phosphate dehydrogenas... [more]
ALRB_DICDI2.867e-3842.63Aldose reductase B OS=Dictyostelium discoideum GN=... [more]
ALRA_DICDI1.573e-3641.38Aldose reductase A OS=Dictyostelium discoideum GN=... [more]
ALRC_DICDI2.511e-3440.46Aldose reductase C OS=Dictyostelium discoideum GN=... [more]
ALDR_PIG2.511e-3444.83Aldose reductase OS=Sus scrofa GN=AKR1B1 PE=1 SV=2[more]
ALDR_BOVIN5.595e-3444.83Aldose reductase OS=Bos taurus GN=AKR1B1 PE=1 SV=1[more]
AKCL2_PIG7.307e-3443.891,5-anhydro-D-fructose reductase OS=Sus scrofa GN=... [more]
ALDR_HUMAN1.628e-3345.51Aldose reductase OS=Homo sapiens GN=AKR1B1 PE=1 SV... [more]
ALDR_RABIT1.055e-3244.83Aldose reductase OS=Oryctolagus cuniculus GN=AKR1B... [more]
A1A1A_DANRE1.055e-3243.20Alcohol dehydrogenase [NADP+] A OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06012B08SK RindPdig24 Citrus clementina cDNA clone C06012B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298434 ID=CX298434; Name=CX298434; organism=Citrus clementina; type=EST; length=716bp
TCTACCTCGTCCATTTTCCTGTAGCCACAACAACACACTGGCGTTGGTAC
AACTGATAGTGCATTAGATGCGGATGGTGTGCTGGAGATAGACACAACTA
TATCATTGGAAACAACCTGGCATGCAATGGAGGATTTGGTTTCAATGGGT
TTAGTTCGAAGCATTGGGATCAGCAACTATGACATCTTTTTAACAAGAGA
CTGCTTAGCTTACTCCAAAGTGAAGCCGGTGGTGAATCAGTTTGAAACTC
ACCCATACTTCCAACGTGATTCTCTTGTCAAGTTCTGTCAGAAGCATGGG
ATATGTGTCACAGCTCATACTCCTCTAGGAGGTGCCGTAGCCAACACTGA
ATGGTTCGGTACTGTCTCATGTTTGGATGACCCCGTTTTGAAAGGTCTAG
CTGAGAAATACAAGAGGACTGTGGCCCAGATTGTTCTCAGGTGGGGCATC
CAACGGAACACAGCTGTCATCCCGAAGACGTCAAAGCTTGAGAGACTGGA
AGAGAATTTCAAAGTTTTTGACTTTGAGCTGAGCAAAGAAGACATGGATG
TGATTAAGAGCATTGACAGAAAATATCGAACCAACCAGCCTGCTAGGTTT
TGGGGCATAGATCTGTTTGCTTAAGTATGCTCATTGTTCTGGATAAGAAT
GTTTCTATGAGTTCAAAAATAAGTGATCAAACGTCCTTGATGTGTTTTAG
TATTAAAACATTTTAT
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