CX298435

Overview
NameCX298435
Unique NameCX298435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:296..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.672e-36
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 YCTQ--TPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC Q    QYPCA GK YYG GP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+W+WM  VHS +NQGFG T + ING  EC GQN+ Q  DR++ Y  YC  FGV PG NL C
Sbjct:  167 YCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 70/121 (57.85%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 YCTQT-PQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC +   Q+PC  GK YYG GP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALW+WM  VH  + QGFG TIR ING  EC G+N   V  RV  Y DYC++FGVDPG NL C
Sbjct:  168 YCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 69/121 (57.02%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 YCTQT-PQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC ++  Q+PC  GK YYG GP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALW+WM  VH  ++QGFG TIR ING  EC G+N   V  RV  Y DYC++FGV PG NL C
Sbjct:  165 YCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.415e-35
Identity = 69/121 (57.02%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 YCTQTP-QYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC  T  Q+PCA G+ YYG GP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALW+WM  VH  + QGFG T R +    ECGG N AQ+  RV  Y  YC++ GVDPGPNL C
Sbjct:  149 YCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.119e-35
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 YCTQTP--QYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC +    QYPC++ K Y+G GPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALWYWM++V   +NQGFG TIR ING  EC G N   VQ RV  YT+YC++ GV  G NL C
Sbjct:  149 YCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 69/124 (55.65%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR----YVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC ++ QYPC   K Y+G GP+QL+ N NYIDAG+ + FDGLN P+ V RD +ISFKT+LW+W+R    YV    NQGFG TIR ING  EC G N AQ+  RV  Y +YC + GV PG NL C
Sbjct:  127 YCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.565e-34
Identity = 69/121 (57.02%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 YC-TQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC     Q+PCA G+ YYG GP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALW+WM  VH  + QGFG TIR ING  EC G N AQ+  RV  Y  YC++  VDPGPNL C
Sbjct:  160 YCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.554e-34
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 YCTQTP-QYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSAL--NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC +T  Q+PC  GK YYG GP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALWYW   VH A    QGFG TIR ING  EC G+N   V +RV  Y  +C++FGVDPG NL C
Sbjct:  149 YCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.371e-30
Identity = 63/121 (52.07%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 YCTQTP-QYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC +   QYPCA GK Y+G GPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LW+WM  V   LNQGFG TIR ING  EC G N   V  R+R Y DYC + GVDPGPNL C
Sbjct:  149 YCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27
Identity = 67/152 (44.08%), Postives = 84/152 (55.26%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC*LDIWYENVTL 393
            YC  + Q+PCA G+ Y+G GPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALW+WM               R+  S+ ++      GFG     ING  ECG     +VQDR+  Y  YC   GV PG NL+C    W+ N  L
Sbjct:  173 YCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALL 324          
The following BLAST results are available for this feature:
BLAST of CX298435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_BETVU1.672e-3659.02Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ8.299e-3657.85Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ8.299e-3657.02Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE2.415e-3557.02Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU4.119e-3557.38Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA1.565e-3455.65Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIA_MAIZE1.565e-3457.02Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ4.554e-3455.28Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA1.371e-3052.07Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_SOLTU2.420e-2744.08Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06012B09SK RindPdig24 Citrus clementina cDNA clone C06012B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298435 ID=CX298435; Name=CX298435; organism=Citrus clementina; type=EST; length=558bp
TATTGTACACAGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACTA
TGGCCTGGGACCGATTCAGCTCACCGGAAACGGAAACTACATAGATGCCG
GAAGGGCCATCGGTTTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGG
GACCGTGTCATATCTTTCAAGACTGCTTTGTGGTATTGGATGAGATACGT
GCACTCAGCACTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATG
GTCCTGCTGAATGCGGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTT
AGGCGTTACACTGATTATTGCAAAAGATTTGGTGTTGATCCTGGACCAAA
TCTCGAGTGCTGATTAGATATTTGGTATGAAAATGTTACACTATGTGTAT
TATATTATATCACAGTAAGCCAGAGTTATTCCAAACAACTTTCTTTGTTT
GGTAACTCTGATGGAATAATTTTTGTGTACCTGATCATAAAATAAAGAGA
AAATTAATGGATGATTTGCAGTAATGAGTTTGCTAAAAAAAAAAAAAAAA
AAAAAAAA
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