CX298436

Overview
NameCX298436
Unique NameCX298436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298436_ssr521 microsatellite CX298436_ssr521:521..536. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig749 contig Ccv1_Contig749:1..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HS185_ARATH (18.5 kDa class IV heat shock protein OS=Arabidopsis thaliana GN=HSP18.5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.005e-31
Identity = 82/166 (49.40%), Postives = 100/166 (60.24%), Query Frame = 1
Query:   40 MSIVPVSDQGIISNTPLSSEVWGPFQ--NFLEEFPLSIDLWGPFSDFPSLSRGIFP-----TRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTDDGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQP---------QNVRVVEITGSD 489
            MS++P+S++  +S       +W PF+  N   +FP           FPSLSR IFP     T  TQ+NW+ETP AHVFKAY PG+  D+VI FVDE+  LQI T D KFMSRFKLP+NA+TDQV A M    L V V K+ S  P         +NVRVVEITG D
Sbjct:    1 MSMIPISNRRRLSP---GDRIWEPFELMNTFLDFPSPALFLS--HHFPSLSREIFPQTSSSTVNTQLNWTETPTAHVFKAYLPGVDQDEVIAFVDEEGYLQICTGDNKFMSRFKLPNNALTDQVTAWMEDEFLVVFVEKDASSSPPQLPEIEENRNVRVVEITGDD 161          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 64/142 (45.07%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  136 PLSIDLWGPFSDFP----SLSRGIFPTRQ-----TQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEIT 480
            P S+D+W PF DFP    +LS   FP        T+I+W ETP AHVFKA  PGL  ++V V +++DR+LQIS +                   GKFM RF+LP+NA  DQVKA+M  G+LTVTV KE   +P+ V+ +EI+
Sbjct:    2 PFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPE-VKSIEIS 142          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.306e-23
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  136 PLSIDLWGPFSDFP---SLSRGIFP--TRQ------TQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            P S+D+W PF DFP   +LS   FP  +R+      T+++W ETP AHVFKA  PGL  ++V V +++D++LQIS +                   GKFM RF+LP+NA  +QVKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   18 PFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 161          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  136 PLSIDLWGPFSDFP---SLSRGIFPTRQ-----TQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            P S+D+W PF DFP   S     FP        T+++W ETP AHVFKA  PG+  ++V V +++DR+LQIS +                   GKFM RF+LP+NA  DQVKA+M  G+LTVTV KE   +P+ V+ ++I+G
Sbjct:   18 PFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPE-VKTIDISG 158          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 1
Query:   40 MSIVPVSDQGIISNT--PLSSEVWGPFQNFLEEFPLSIDLWGPFSDFPSLSRGIFPTRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            MS++P    G  SN   P S +VW P    L++FP S     P + FP  +     TR   ++W ETP AHVFKA  PGL  ++V V V++DR+LQIS +                   GKF+ RF+LP+NA  D+VKASM  G+LTVTV KE  ++   V+ +EI+G
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDP----LKDFPFSNS--SPSASFPRENPAFVSTR---VDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKE-EIKKAEVKSIEISG 158          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 1
Query:  136 PLSIDLWGPFSDF---PSLSRGIFPTRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            P S+D+W PF DF    SLS        T+++W ETP AHVF+A  PGL  ++V V +++DR+LQIS +                   G FM RF+LP+NA  +QVKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   18 PFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 153          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 64/137 (46.72%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  136 PLSIDLWGPFSD--FPSLSRGIFPT-RQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            P SID++ PF +  FP  + G       T+I+W ETP AHVFKA  PGL  ++V V V+EDR+LQIS +                   GKFM RF+LP+NA  DQVKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   19 PFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKP-DVKSIEISG 154          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 59/138 (42.75%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  136 PLSIDLWGPFSDF----PSLSRGIFPTRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            P S+D+W PF DF     S+S        T+++W ETP AHVFKA  PGL  ++V V +++DR+LQIS +                   GKF  RF+LP+NA  ++VKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   18 PFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 154          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  136 PLSIDLWGPFSDFP---SLSRGIFPTRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            P S+D+W PF DFP   SLS        T+++W ETP AHVFKA  PGL  ++V + + + R+LQIS +                   GK + RF+LP+NA  DQVKASM  G+LTVTV KE   +P +V+ ++I+G
Sbjct:   18 PFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKP-DVKAIDISG 153          
BLAST of CX298436 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.819e-21
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 1
Query:  136 PLSIDLWGPFSD--FPSLSRGIFPT-RQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 483
            P SID++ PF +  FPS + G       T+I+W ETP  HVFK   PGL  ++V V V+EDR+LQIS +                   GKFM RF+LP+NA  DQVKASM  G+LTVTV KE   +P+ V+ +EI+G
Sbjct:   19 PFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPE-VKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CX298436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HS185_ARATH3.005e-3149.4018.5 kDa class IV heat shock protein OS=Arabidopsi... [more]
HSP11_MEDSA1.766e-2345.0718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP16_SOYBN2.306e-2344.1418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA6.709e-2342.9618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA4.349e-2241.0718.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN7.418e-2243.8017.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE1.265e-2146.7217.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP14_SOYBN2.158e-2142.7517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOYBN2.158e-2143.0717.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLLC2.819e-2145.9917.8 kDa class I heat shock protein OS=Solanum lyc... [more]

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Properties
Property NameValue
Genbank descriptionC06012B10SK RindPdig24 Citrus clementina cDNA clone C06012B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298436 ID=CX298436; Name=CX298436; organism=Citrus clementina; type=EST; length=582bp
TTGCACGTACGTTACCAAAGCCGAGAACCAGAAAGAAAAATGTCAATTGT
TCCGGTAAGCGATCAAGGTATAATATCTAACACTCCTCTCTCTTCAGAAG
TATGGGGTCCCTTCCAGAACTTTCTAGAAGAATTCCCCTTATCCATTGAC
CTTTGGGGCCCATTCAGTGATTTTCCTTCACTTTCCCGGGGGATTTTTCC
AACCCGTCAAACCCAGATCAACTGGAGTGAGACCCCGAGAGCCCACGTGT
TCAAAGCTTACTTTCCAGGGCTGACGGGAGACCAAGTGATAGTGTTCGTC
GATGAAGACAGAATGCTCCAAATAAGCACCGATGATGGCAAGTTCATGAG
CAGGTTTAAGCTGCCTGATAATGCTATTACCGATCAGGTCAAGGCTTCCA
TGAATTATGGGTTGCTCACTGTTACAGTCTCTAAGGAGATGTCACTGCAG
CCACAAAATGTTAGGGTTGTTGAAATTACTGGGTCTGACTAAATTTCTGG
GTTTGTGATATTATTGTGCCTATATATATATATATAATGTGAGCTTGTGT
TTGCTTTGAAGTGTAGACTTGTGTAGTACTGT
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