CX298447

Overview
NameCX298447
Unique NameCX298447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig564 contig Ccv1_Contig564:4..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.965e-42
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309
            SQI+Q RRKMREIMV QA +CDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPA+E  PEA TEVIGA
Sbjct:  159 SQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.058e-42
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ RRKMREIM   A SCDLK LV+KFI E IGREIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K++RPADEP+ E  TEVIGA
Sbjct:  159 SQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 1.922e-41
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ RRKM EIMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVKVDRPADE M E PTE+IGA
Sbjct:  159 SQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 5.592e-41
Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ RRKMR+IMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVKVDRPADE   E PTE+IGA
Sbjct:  159 SQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 9.539e-41
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ RRKMREIMV QA SCDLK LV KFI E+IG+EIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG KV+ PADE + E   E++GA
Sbjct:  159 SQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 164.081 bits (414), Expect = 2.776e-40
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ RRKMREIMV QA SCDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K+DRPA+E + E PTEVIGA
Sbjct:  159 SQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.055e-39
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ RRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RP +E M E  TEV+GA
Sbjct:  159 SQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.799e-39
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ RRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPADE + EA  E+ GA
Sbjct:  159 SQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.431e-36
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQ-AASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 309
            SQIRQ R KMREIM+ + A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVKVDRPADE + E PTE+IGA
Sbjct:  159 SQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.511e-35
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADE 273
            SQIRQ RRKM EIM  QA+SCDLK LV KFI EVIG+EIEKATSSI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K+DRPA++
Sbjct:  159 SQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
The following BLAST results are available for this feature:
BLAST of CX298447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RS3A_HELAN2.965e-4285.4440S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A1_VITVI5.058e-4283.5040S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH1.922e-4183.6540S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A1_ARATH5.592e-4182.6940S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_CICAR9.539e-4180.5840S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO2.776e-4083.6540S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_DAUCA1.055e-3980.5840S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_TOBAC1.799e-3980.5840S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_BRARA2.431e-3678.1040S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_ORYSJ3.511e-3580.4340S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC06012C09SK RindPdig24 Citrus clementina cDNA clone C06012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298447 ID=CX298447; Name=CX298447; organism=Citrus clementina; type=EST; length=470bp
AGCCAGATTAGACAGTCTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTGTGA
AGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAAGTG
ATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTCACT
ACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATATGAA
TGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAAAACCNAANAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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