CX298447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 2.965e-42 Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309 SQI+Q RRKMREIMV QA +CDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPA+E PEA TEVIGA Sbjct: 159 SQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 5.058e-42 Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ RRKMREIM A SCDLK LV+KFI E IGREIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K++RPADEP+ E TEVIGA Sbjct: 159 SQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3) HSP 1 Score: 167.933 bits (424), Expect = 1.922e-41 Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ RRKM EIMV +A+SCDLK LV KFI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVKVDRPADE M E PTE+IGA Sbjct: 159 SQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3) HSP 1 Score: 166.392 bits (420), Expect = 5.592e-41 Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ RRKMR+IMV +A+SCDLK LV KFI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVKVDRPADE E PTE+IGA Sbjct: 159 SQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 9.539e-41 Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ RRKMREIMV QA SCDLK LV KFI E+IG+EIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG KV+ PADE + E E++GA Sbjct: 159 SQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4) HSP 1 Score: 164.081 bits (414), Expect = 2.776e-40 Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ RRKMREIMV QA SCDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K+DRPA+E + E PTEVIGA Sbjct: 159 SQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.055e-39 Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ RRKM EIM QA+SCDLK LV KFI E IGREIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RP +E M E TEV+GA Sbjct: 159 SQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.799e-39 Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ RRKM EIM QA+SCDLK LV KFI E IGREIEKATSSI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPADE + EA E+ GA Sbjct: 159 SQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 2.431e-36 Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQ-AASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 309 SQIRQ R KMREIM+ + A+SCDLK LV KFI E IG++IEKAT IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVKVDRPADE + E PTE+IGA Sbjct: 159 SQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 3.511e-35 Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1 Query: 1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADE 273 SQIRQ RRKM EIM QA+SCDLK LV KFI EVIG+EIEKATSSI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K+DRPA++ Sbjct: 159 SQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250 The following BLAST results are available for this feature:
BLAST of CX298447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298447 ID=CX298447; Name=CX298447; organism=Citrus clementina; type=EST; length=470bpback to top |