CX298449

Overview
NameCX298449
Unique NameCX298449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1665 contig Ccv1_Contig1665:625..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32
Identity = 62/101 (61.39%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKR 303
            AM+++VEE +DLI+V+GG+NSSNT+HLQEIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VEDV++++F+++R
Sbjct:  297 AMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32
Identity = 62/101 (61.39%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKR 303
            AM+++VEE +DLI+V+GG+NSSNT+HLQEIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VEDV++++F+++R
Sbjct:  297 AMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.459e-31
Identity = 63/100 (63.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 300
            AM+K+VE  +DL++V+GG+NSSNT+HLQEI+ +R IPSY IDS  RIGPGN++ +K +H  L  KENWLP+G I +GITSGASTPDK V DVL+K+F +K
Sbjct:  298 AMFKLVEYPLDLMVVIGGFNSSNTTHLQEISIEREIPSYHIDSADRIGPGNRVEHKPLHRPLEIKENWLPEGPIVVGITSGASTPDKVVSDVLEKIFALK 397          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.594e-30
Identity = 57/104 (54.81%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEA 312
            A++++V+E +DL++V+GG+NSSNT+HLQEI+ D+ IPSY IDS  RIGPGN++ +K ++ +L   +NWLP G + IG+TSGASTPDK V D+++K+F IK   A
Sbjct:  306 AIFQLVDEPLDLMVVIGGFNSSNTTHLQEISIDKNIPSYHIDSVDRIGPGNRVEHKPLNADLTVTDNWLPNGPLAIGVTSGASTPDKVVSDIVEKIFSIKSASA 409          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.694e-30
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 315
            AM  +VEE+VD+++V+GG+NSSNT+HLQEI+ ++GI SY IDS+KRI PGNKI +K +  ++  KENWLP G+I +G+TSGASTPDK VE V++++FE K    L
Sbjct:  297 AMLNLVEEEVDVMVVIGGFNSSNTTHLQEISIEKGIDSYHIDSDKRILPGNKIEHKPLEKDIETKENWLPDGKIIVGVTSGASTPDKVVEAVIERIFEEKNAGVL 401          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.131e-30
Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 300
            AM  +V+E +DL++V+GG+NSSNT+HLQEIA + GIPSY IDS  RIGPGN+I +K +H      ENWLP   ITIGITSGASTPDK VE+VL K+F ++
Sbjct:  297 AMLSLVKEPLDLMVVIGGYNSSNTTHLQEIAIEHGIPSYHIDSADRIGPGNRIEHKPLHQNPTVAENWLPDRPITIGITSGASTPDKVVEEVLNKIFALR 396          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.190e-29
Identity = 57/105 (54.29%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 315
            AM ++V+E +DL++V+GG+NSSNT+ LQ+I+++RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDK VEDV++K+F +K   A+
Sbjct:  297 AMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSVNSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATTAV 401          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.778e-29
Identity = 57/105 (54.29%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 315
            AM ++V+E +DL++V+GG+NSSNT+ LQ+I+++RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDK VEDV++K+F +K   A+
Sbjct:  297 AMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSINSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATAAV 401          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 8.853e-29
Identity = 59/103 (57.28%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 309
            AM+ +VEE + L++V+GG+NSSNT+HLQEIA + GIPS  IDS  RIGPGN++ +K +  +L   E WLP G+IT+G+TSGASTPDK VE+V+KK+  IK  +
Sbjct:  270 AMFDLVEEDLSLMVVIGGFNSSNTTHLQEIAVEHGIPSVHIDSGDRIGPGNRVEHKPLGKDLEVLEPWLPAGKITVGVTSGASTPDKVVEEVMKKILAIKEAQ 372          
BLAST of CX298449 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.364e-28
Identity = 57/105 (54.29%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    1 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 315
            AM ++VE  ++L++V+GG+NSSNT+ LQ+IA +R IPSY ID+ +RI  G+ I ++ ++G+L+  ENWLP G+I +GITSGASTPDK VEDV++K+F +K   AL
Sbjct:  297 AMLELVEHNLNLMVVIGGFNSSNTTQLQQIAFERRIPSYHIDTVERIKSGDSIEHRQLNGQLITTENWLPDGEIVVGITSGASTPDKVVEDVIEKIFAVKATAAL 401          
The following BLAST results are available for this feature:
BLAST of CX298449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_SYNP68.555e-3261.394-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE78.555e-3261.394-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP41.459e-3163.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM13.594e-3054.814-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA54.694e-3058.104-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB6.131e-3062.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT5.190e-2954.294-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP6.778e-2954.294-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY38.853e-2957.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP73.364e-2854.294-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC06012C11SK RindPdig24 Citrus clementina cDNA clone C06012C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298449 ID=CX298449; Name=CX298449; organism=Citrus clementina; type=EST; length=480bp
GCAATGTATAAGATGGTTGAGGAAAAGGTCGATCTTATCTTGGTTGTTGG
TGGGTGGAACTCGAGCAATACCTCACACCTTCAAGAGATTGCAGAAGACC
GTGGAATTCCCTCATACTGGATCGATAGTGAGAAGAGAATAGGTCCCGGA
AACAAAATAGCATATAAATTGATGCATGGTGAGCTGGTGGAGAAAGAAAA
TTGGCTGCCGAAAGGCCAGATCACAATCGGTATAACATCCGGTGCCTCCA
CCCCAGATAAGGCTGTTGAAGACGTCCTTAAAAAGGTATTTGAGATCAAG
CGTGAAGAAGCCTTGCAATTAGCGTAAACTGAGGTCCAAACATACACATT
ATCAATAAATTTCGATGTGATTGTATCACTAGATATTGTAAAATTATAAA
CACAGCCCTCTGCCGGGTCTTTTATCAGTGCCCATGTAATCTGAAATTTA
TATTTTTTGTGCAAAAAAAAAAAAAAAAAA
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