CX298450

Overview
NameCX298450
Unique NameCX298450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OPR1_SOLLC (12-oxophytodienoate reductase 1 OS=Solanum lycopersicum GN=OPR1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.089e-58
Identity = 104/159 (65.41%), Postives = 133/159 (83.65%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKFKLLYLHVIEPRMIQLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 482
            NRCRFALE+VEAV +EIG++RVG+R+SP+A   EA D+NP ALGLYM ++L+K+ L Y HV+EPRM    +K E   SL+ MR+A++GTFI AGGY+R++GN+A+  + ADLVA+GRLF++NPDLPKRFELNAPLNKYNR TFY  DP+VGYTDYPFL+
Sbjct:  215 NRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 373          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OPR2_ARATH (12-oxophytodienoate reductase 2 OS=Arabidopsis thaliana GN=OPR2 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.146e-56
Identity = 103/159 (64.78%), Postives = 132/159 (83.02%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKFKLLYLHVIEPRMIQLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 482
            NRC+FALEVV+AV  EIG +RVG+RLSP+A+  E+ D+NPEALGLYM ++L+K+ +LY H+IEPRM  + + +   H+L+ MR AF+GTFI+AGG+ R++GN+AVA    DLVA+GR FLANPDLPKRF+L+APLNKYNRSTFY  DPVVGYTDYP L+
Sbjct:  213 NRCKFALEVVDAVAKEIGPDRVGIRLSPFADYMESGDTNPEALGLYMVESLNKYGILYCHMIEPRMKTVGEIAACSHTLMPMREAFKGTFISAGGFTREDGNEAVAKGRTDLVAYGRWFLANPDLPKRFQLDAPLNKYNRSTFYTSDPVVGYTDYPSLE 371          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OPR1_ARATH (12-oxophytodienoate reductase 1 OS=Arabidopsis thaliana GN=OPR1 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.121e-54
Identity = 98/159 (61.64%), Postives = 130/159 (81.76%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKFKLLYLHVIEPRMIQLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 482
            NRC+F LE+V+AV  EIG +RVG+RLSP+A+  E+ D+NP ALGLYMA++L+K+ +LY HVIE RM  + +     H+L+ MR+AF+GTFI+AGG+ R++GN+AV+    DLVA+GR FLANPDLPKRF+++APLNKY+R TFY  DPVVGYTDYPFL+
Sbjct:  211 NRCKFPLEIVDAVAKEIGPDRVGIRLSPFADYMESGDTNPGALGLYMAESLNKYGILYCHVIEARMKTMGEVHACPHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLE 369          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OPRL_SOLLC (12-oxophytodienoate reductase-like protein OS=Solanum lycopersicum GN=OPR2 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.196e-51
Identity = 97/161 (60.25%), Postives = 123/161 (76.40%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKFKLLYLHVIEPRMIQLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLKLA 488
            +RCR ALE+VEAV +EIGA+++G++LSP+       DSN EAL  YMA  L K  +LYLHV+EPR            SLL +R+AF+GT IA+GGY + +G KA+  NYADL++FGR+FLANPDLPKRFE+NAPLNKYNRSTFY  DP++GYTDYPFL++A
Sbjct:  204 DRCRLALEIVEAVANEIGADKIGIKLSPFDG---KKDSNSEALATYMANELSKLGVLYLHVMEPR-------ETVNRSLLPIRKAFKGTLIASGGYGKSDGEKAIDENYADLISFGRMFLANPDLPKRFEVNAPLNKYNRSTFYTNDPIIGYTDYPFLEVA 354          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OPRL1_ARATH (Putative 12-oxophytodienoate reductase-like protein 1 OS=Arabidopsis thaliana GN=At1g09400 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.304e-47
Identity = 90/137 (65.69%), Postives = 113/137 (82.48%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKFKLLYLHVIEPRMIQLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNK 416
            NRCRFAL+V+EAV  EIG +RVG+RLSP+A+  E+ D++P+ LGLYMAK+L++F++LY H+IEPRM  +++  E + SL  MR AF GTFI AGGY R++GNKAVA    DLVA+GRLFLANPDLPKRFELNAPLNK
Sbjct:  188 NRCRFALQVIEAVSKEIGPDRVGIRLSPFADYMESGDTDPKRLGLYMAKSLNRFEILYCHMIEPRMKTVSEIFECRESLTPMRNAFNGTFIVAGGYTREDGNKAVAEGRTDLVAYGRLFLANPDLPKRFELNAPLNK 324          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OPR3_SOLLC (12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.995e-44
Identity = 91/173 (52.60%), Postives = 122/173 (70.52%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKF------KLLYLHVIEPRMI--------QLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 482
            NRC+F  +VV+AVVS IGA+RVG+R+SP  +  +A+DSNP +LGL + + L+K       KL YLHV +PR +        +L  + E    + ++R A++GTFI +GGY R+ G +AVA   ADLV++GRLF++NPDL  R +LNAPLNKYNR TFY  DPVVGYTDYPFL+
Sbjct:  213 NRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTFYTQDPVVGYTDYPFLQ 385          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OPR3_ARATH (12-oxophytodienoate reductase 3 OS=Arabidopsis thaliana GN=OPR3 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 87/173 (50.29%), Postives = 117/173 (67.63%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKF------KLLYLHVIEPRMI---------QLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFL 479
            NRCRF  +VVE VVS IGA +VG+R+SP  +  +A DS+P +LGL +   L+K       KL YLHV +PR           Q +D+ E +  + S+R A+ GTF+++GG+N++ G +AV    ADLV++GRLF+ANPDL  RF+++  LNKYNR TFY  DPVVGYTDYPFL
Sbjct:  214 NRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAK-LMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPFL 385          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OYEA_SCHPO (Putative NADPH dehydrogenase C5H10.04 OS=Schizosaccharomyces pombe GN=SPAC5H10.04 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.118e-27
Identity = 73/161 (45.34%), Postives = 101/161 (62.73%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKF-KLLYLHVIEPRMIQLTDKSETQHSLLS-MRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 482
            NRCRF LEV+EAV  +IG ERVG R+SP++   + +D     + L M++   +F KL Y+H IEPR      K  +     S +++ ++G FI AGGY+ +   +A A     LVAFGR F+ANPDL  R + + PLNK++RS+FY+P    GYTDYPF K
Sbjct:  218 NRCRFPLEVLEAVTRKIGQERVGYRISPFSGWMQKIDFMEVNIYL-MSEIAKRFPKLAYIHAIEPRKYWSGHKLVSSEQNTSFLQKYWKGPFITAGGYDPETAVQA-ANERGVLVAFGRNFIANPDLVFRIKHHIPLNKWDRSSFYLPKTEKGYTDYPFSK 376          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: OYEB_SCHPO (Putative NADPH dehydrogenase C5H10.10 OS=Schizosaccharomyces pombe GN=SPAC5H10.10 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 73/165 (44.24%), Postives = 99/165 (60.00%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALDKF-KLLYLHVIEPRM-----IQLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 482
            NR RF LE++E+VV+ IG ERVG R+SP+++  +  DS  EA    + K  ++F  L YLH IEPR      + +T +  T    L  +  +   FI AGG++RD   + +A     LVAFGR FL+NPDLP R + N PLNK++R+TFY      GY DYPF K
Sbjct:  225 NRARFCLELLESVVNAIGQERVGYRISPFSDIWKDKDSF-EAHVFMIKKIKERFPNLAYLHAIEPRQYWNGHVHITQEKNT----LIYKNLWGDPFITAGGHDRDSAIQ-MAEQENTLVAFGRYFLSNPDLPFRLKYNLPLNKWDRATFYTKMSPKGYIDYPFSK 383          
BLAST of CX298450 vs. ExPASy Swiss-Prot
Match: NEMA_ECOLI (N-ethylmaleimide reductase OS=Escherichia coli (strain K12) GN=nemA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 60/159 (37.74%), Postives = 80/159 (50.31%), Query Frame = 3
Query:    6 NRCRFALEVVEAVVSEIGAERVGMRLSPYAECAEAVDS-NPEALGLYMAKALDKFKLLYLHVIEPRMIQLTDKSETQHSLLSMRRAFEGTFIAAGGYNRDEGNKAVAANYADLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFL 479
            NR R  LEVV+A + E GA+R+G+R+SP        +  N EA  LY+ + L K  + YLH+ EP       +  T      +R  F G  I AG Y  ++    +     D VAFGR ++ANPDL  R +  A LN     +FY      GYTDYP L
Sbjct:  210 NRARLVLEVVDAGIEEWGADRIGIRVSPIGTFQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG--GEPYTDAFREKVRARFHGPIIGAGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLVARLQRKAELNPQRAESFY-GGGAEGYTDYPTL 365          
The following BLAST results are available for this feature:
BLAST of CX298450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
OPR1_SOLLC2.089e-5865.4112-oxophytodienoate reductase 1 OS=Solanum lycoper... [more]
OPR2_ARATH1.146e-5664.7812-oxophytodienoate reductase 2 OS=Arabidopsis tha... [more]
OPR1_ARATH3.121e-5461.6412-oxophytodienoate reductase 1 OS=Arabidopsis tha... [more]
OPRL_SOLLC7.196e-5160.2512-oxophytodienoate reductase-like protein OS=Sola... [more]
OPRL1_ARATH6.304e-4765.69Putative 12-oxophytodienoate reductase-like protei... [more]
OPR3_SOLLC4.995e-4452.6012-oxophytodienoate reductase 3 OS=Solanum lycoper... [more]
OPR3_ARATH2.836e-3950.2912-oxophytodienoate reductase 3 OS=Arabidopsis tha... [more]
OYEA_SCHPO1.118e-2745.34Putative NADPH dehydrogenase C5H10.04 OS=Schizosac... [more]
OYEB_SCHPO2.108e-2644.24Putative NADPH dehydrogenase C5H10.10 OS=Schizosac... [more]
NEMA_ECOLI5.561e-1937.74N-ethylmaleimide reductase OS=Escherichia coli (st... [more]

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Properties
Property NameValue
Genbank descriptionC06012C12SK RindPdig24 Citrus clementina cDNA clone C06012C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298450 ID=CX298450; Name=CX298450; organism=Citrus clementina; type=EST; length=649bp
GAGGGAACCGATGCCGATTTGCCCTGGAAGTAGTTGAAGCTGTGGTTAGT
GAAATCGGAGCCGAAAGAGTTGGCATGAGACTGTCGCCTTATGCTGAGTG
CGCGGAAGCTGTAGACTCAAATCCGGAAGCACTTGGCCTGTACATGGCGA
AAGCACTTGACAAATTTAAGCTTCTTTATCTACACGTAATCGAGCCAAGG
ATGATTCAACTCACTGACAAGTCTGAAACTCAACACAGCTTATTGTCGAT
GAGAAGAGCTTTTGAGGGAACTTTCATTGCTGCTGGAGGATATAATAGAG
ATGAAGGCAACAAAGCTGTTGCAGCGAATTATGCAGATTTGGTTGCTTTT
GGCCGTCTGTTTTTAGCTAATCCGGATTTGCCGAAGCGCTTTGAGCTGAA
TGCACCTTTGAACAAGTACAACAGGAGCACGTTTTACATTCCTGATCCTG
TTGTTGGCTACACAGATTATCCTTTCCTAAAATTAGCTTAAGTTTTTTAA
AAAAATTATTAAGTGAGAATGAGAGCGACATTGATTAAAGTGAAATTTGC
GAAAATTTTTTCTTGATTTTTGTTGTTATTAATCATTATTTCATAAATAA
TCGTAGATAAAAAATTTAATTGAGTTCAAAAAAAAAGGGGGGGCCCGGT
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