CX298451

Overview
NameCX298451
Unique NameCX298451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig767 contig Ccv1_Contig767:188..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   10 RDREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R + +TSHLPGV IAIMGCIVNGPGEMADADFGYVG  PGKIDLYVGK  V++ I    A D L+ LI+ HGRW EP
Sbjct:  573 RIQSRTSHLPGVKIAIMGCIVNGPGEMADADFGYVGSKPGKIDLYVGKECVEKDIDFADADDRLVNLIRAHGRWIEP 649          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.689e-24
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   10 RDREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R R+ T HL GV IA+MGCIVNGPGEMADADFGYVGGAP KI+LYV  T VK  I  E+A + L+ LIK++GRW +P
Sbjct:  508 RIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVKFNIPQEEAVERLVDLIKEYGRWVDP 584          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   10 RDREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R +E+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  + ME A + LIQL+K+HG W EP
Sbjct:  523 RIKERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSYVPMENAEEELIQLLKEHGVWKEP 600          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   10 RDREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R RE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  524 RIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   10 RDREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R RE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  524 RIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   10 RDREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R RE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  524 RIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   10 RDREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R RE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  524 RIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.140e-22
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   10 RDREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R + +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L+QLIKD+G W +P
Sbjct:  584 RIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNGLWQDP 660          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.795e-22
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   10 RDREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R R++T HLPG+ IAIMGCIVNGPGEMADADFG+VG   G IDLYV  T VK  I ME A + LI+L+++HG W +P
Sbjct:  530 RIRKRTQHLPGLKIAIMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELIRLLQEHGVWKDP 606          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.227e-22
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   10 RDREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R  E+T HL G+ IA+MGCIVNGPGEMADADFG+VG   G +DLYV  T VK  I MEQA D L+ L+K+HG W +P
Sbjct:  529 RIHERTQHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTGMVDLYVKHTCVKAHIPMEQAEDELVLLLKEHGVWKDP 605          
The following BLAST results are available for this feature:
BLAST of CX298451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_PARUW1.584e-2570.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM88.689e-2466.234-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU1.255e-2265.384-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR1.639e-2265.384-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB1.639e-2265.384-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA1.639e-2265.384-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT21.639e-2265.384-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN2.140e-2261.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN2.795e-2263.644-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB6.227e-2262.344-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionC06012D01SK RindPdig24 Citrus clementina cDNA clone C06012D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298451 ID=CX298451; Name=CX298451; organism=Citrus clementina; type=EST; length=608bp
GGCCGAGGCAGAGATCGAGAGAAAACATCGCACTTGCCCGGTGTTTCGAT
TGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGATGCAG
ACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTATGTCGGG
AAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGATGCCTT
GATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCGCAGAAG
AGTAGGATATGGTAATTTCCATCAACAGATATACAATAAAGACTCAGTTG
AAGGGAGACCACCATACCCCAGCTGTTGTATATTAAATTCCACATGGCAC
AAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCAGATGGA
GCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCTCAAGTGTATGCA
GATAAAGCTGTAACACTCCCATTAGTAACAAGTCCAATGTTTCCTACATT
TTGTTTTCTTACACAAACCAAATAATAATGTATTTCCTATGGCATATATT
AGCTTCTAGTGAAACCACTTGAGTTATGTCTGTGGGTTTCTCTTGTATGA
GAAATGTT
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