CX298464

Overview
NameCX298464
Unique NameCX298464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1919 contig Ccv1_Contig1919:150..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC3_ARATH (Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK+MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+ TA
Sbjct:   24 AQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_ABUTH (Cytochrome c OS=Abutilon theophrasti PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.311e-46
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNW E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:   23 AQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_SAMNI (Cytochrome c OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.588e-45
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            CHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA
Sbjct:   25 CHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.756e-44
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:   23 AQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_PHAAU (Cytochrome c OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.912e-44
Identity = 83/89 (93.26%), Postives = 85/89 (95.51%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYS ANKNMAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:   23 AQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.673e-44
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:   23 AQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.673e-44
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:   23 AQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_RICCO (Cytochrome c OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:   23 AQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZATA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_GOSBA (Cytochrome c OS=Gossypium barbadense PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:   23 AQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_ACENE (Cytochrome c OS=Acer negundo PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAVNW   TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA
Sbjct:   23 AQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGYNTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
The following BLAST results are available for this feature:
BLAST of CX298464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC3_ARATH7.129e-4695.51Probable cytochrome c At4g10040 OS=Arabidopsis tha... [more]
CYC_ABUTH9.311e-4695.51Cytochrome c OS=Abutilon theophrasti PE=1 SV=1[more]
CYC_SAMNI1.588e-4597.70Cytochrome c OS=Sambucus nigra PE=1 SV=1[more]
CYC_CUCMA1.756e-4493.26Cytochrome c OS=Cucurbita maxima PE=1 SV=1[more]
CYC_PHAAU3.912e-4493.26Cytochrome c OS=Phaseolus aureus PE=1 SV=1[more]
CYC_BRAOL6.673e-4492.13Cytochrome c OS=Brassica oleracea PE=1 SV=1[more]
CYC_BRANA6.673e-4492.13Cytochrome c OS=Brassica napus PE=1 SV=1[more]
CYC_RICCO8.715e-4492.13Cytochrome c OS=Ricinus communis PE=1 SV=1[more]
CYC_GOSBA8.715e-4492.13Cytochrome c OS=Gossypium barbadense PE=1 SV=1[more]
CYC_ACENE8.715e-4493.26Cytochrome c OS=Acer negundo PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06012E02SK RindPdig24 Citrus clementina cDNA clone C06012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298464 ID=CX298464; Name=CX298464; organism=Citrus clementina; type=EST; length=511bp
GAGGGCTCACTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTC
CTAATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTAC
TCATACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGAC
TTTGTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGA
TGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCA
TATTTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTA
TTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTG
TTTTTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTA
ACTTGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGA
TATTCAATTGAATTTCCTGGTTATAATCATATTTCATGAAAAAAAAAAAA
AAAAAAAAAAA
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