CX298465

Overview
NameCX298465
Unique NameCX298465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298465 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 LTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 171
            L L G+LDG LK R MVLPDRYIDHG+PADQL E+GL   HI+AT L+L+G P+EAL
Sbjct:  660 LALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of CX298465 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 LTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 177
            + L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL I
Sbjct:  656 MALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714          
BLAST of CX298465 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.042e-15
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 LTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 171
            + L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL
Sbjct:  659 MALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREAL 715          
The following BLAST results are available for this feature:
BLAST of CX298465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DXS_ARATH1.086e-1568.42Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ3.161e-1564.41Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN7.042e-1564.91Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
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Properties
Property NameValue
Genbank descriptionC06012E03SK RindPdig24 Citrus clementina cDNA clone C06012E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298465 ID=CX298465; Name=CX298465; organism=Citrus clementina; type=EST; length=526bp
CTAACCTTAAGTGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGT
GCTTCCTGATAGATACATTGACCATGGATCACCAGCCGATCAGCTTGAAG
AATCAGGGCTCTCCTCAAGGCATATCTCTGCAACAGTCTTATCTCTCTTA
GGGAGGCCAAAAGAAGCCCTTCTGATTTAAGTAATCATACAAAATCAAAC
AACATCTTGCCCTTCGGATCCAACTTACAATTCCAAGTTGGGGGTGTTAT
ACACTATAAGGTCCAACTCTTAGAATCTTTACCTTCATATCCCCTGTAAC
CATGAAGCATTACCGTGGGATTATAAATGTAATGGTCAAGCCTTTTGTTG
TTTCTGTACATTCACAATTTTTTCTTGTAATAAAGATACAAGGCATTGAT
CTTCACTGTAGATTAACTCCCCTGTCTTCCACCTGTTTGTTCCAGTTAAG
TTAAATTTCTTTCTTACACCAAATACCACTTTCATTGCTCTTTCTTCCTA
CCAAAAAAAAAAAAAAAAAAAAAAAA
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