CX298472
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2) HSP 1 Score: 241.891 bits (616), Expect = 7.376e-69 Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = -3
Query: 247 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 612
NGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct: 57 NGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178 HSP 2 Score: 40.4318 bits (93), Expect = 7.376e-69 Identity = 15/26 (57.69%), Postives = 21/26 (80.77%), Query Frame = -1
Query: 615 EVWATNEFRAKSKFWYFLESSRRSRR 692
++WATNE RAKSKFWYFL ++ ++
Sbjct: 30 KLWATNEVRAKSKFWYFLRKLKKVKK 55
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 6.170e-68 Identity = 114/122 (93.44%), Postives = 118/122 (96.72%), Query Frame = -3
Query: 247 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 612
NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct: 57 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178 HSP 2 Score: 40.4318 bits (93), Expect = 6.170e-68 Identity = 15/26 (57.69%), Postives = 21/26 (80.77%), Query Frame = -1
Query: 615 EVWATNEFRAKSKFWYFLESSRRSRR 692
++WATNE RAKSKFWYFL ++ ++
Sbjct: 30 KLWATNEVRAKSKFWYFLRKLKKVKK 55
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 2.538e-66 Identity = 114/122 (93.44%), Postives = 118/122 (96.72%), Query Frame = -3
Query: 247 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 612
NGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct: 57 NGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178 HSP 2 Score: 32.7278 bits (73), Expect = 2.538e-66 Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = -1
Query: 615 EVWATNEFRAKSKFWYFLESSRRSRR 692
++W NE AKSKFWYF+ ++ ++
Sbjct: 30 KLWGRNEVCAKSKFWYFMRKLKKVKK 55
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.043e-64 Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = -3
Query: 247 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 612
NGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+ KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct: 57 NGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178 HSP 2 Score: 40.4318 bits (93), Expect = 1.043e-64 Identity = 15/26 (57.69%), Postives = 21/26 (80.77%), Query Frame = -1
Query: 615 EVWATNEFRAKSKFWYFLESSRRSRR 692
++WATNE RAKSKFWYFL ++ ++
Sbjct: 30 KLWATNEVRAKSKFWYFLRKLKKVKK 55
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.233e-32 Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = -3
Query: 250 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 612
+G+++ +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 58 SGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 28.8758 bits (63), Expect = 2.233e-32 Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = -1
Query: 615 VWATNEFRAKSKFWYFLESSRRSRR 689
++A N AKS+FWYF+ R+ ++
Sbjct: 32 IFAPNHVVAKSRFWYFVSQLRKMKK 56
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 8.364e-32 Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = -3
Query: 250 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 612
+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 58 SGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 27.7202 bits (60), Expect = 8.364e-32 Identity = 9/25 (36.00%), Postives = 17/25 (68.00%), Query Frame = -1
Query: 615 VWATNEFRAKSKFWYFLESSRRSRR 689
++A N AKS+FWYF+ ++ ++
Sbjct: 32 IFAPNHVVAKSRFWYFVSQLKKMKK 56
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.364e-32 Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = -3
Query: 250 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 612
+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 58 SGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 27.7202 bits (60), Expect = 8.364e-32 Identity = 9/25 (36.00%), Postives = 17/25 (68.00%), Query Frame = -1
Query: 615 VWATNEFRAKSKFWYFLESSRRSRR 689
++A N AKS+FWYF+ ++ ++
Sbjct: 32 IFAPNHVVAKSRFWYFVSQLKKMKK 56
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.419e-31 Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = -3
Query: 250 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 612
+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 58 SGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 27.7202 bits (60), Expect = 1.419e-31 Identity = 9/25 (36.00%), Postives = 17/25 (68.00%), Query Frame = -1
Query: 615 VWATNEFRAKSKFWYFLESSRRSRR 689
++A N AKS+FWYF+ ++ ++
Sbjct: 32 IFAPNHVVAKSRFWYFVSQLKKMKK 56
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.419e-31 Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = -3
Query: 250 NGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 612
+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 58 SGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 27.7202 bits (60), Expect = 1.419e-31 Identity = 9/25 (36.00%), Postives = 17/25 (68.00%), Query Frame = -1
Query: 615 VWATNEFRAKSKFWYFLESSRRSRR 689
++A N AKS+FWYF+ ++ ++
Sbjct: 32 IFAPNHVVAKSRFWYFVSQLKKMKK 56
BLAST of CX298472 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.847e-31 Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = -3
Query: 286 GQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL 609
G++++I +++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+ IQIIK +IPA +R KQFH+SKIKFPLV R +RKL
Sbjct: 59 GEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166 HSP 2 Score: 26.9498 bits (58), Expect = 1.847e-31 Identity = 9/25 (36.00%), Postives = 17/25 (68.00%), Query Frame = -1
Query: 615 VWATNEFRAKSKFWYFLESSRRSRR 689
++A + AKS+FWYFL ++ ++
Sbjct: 32 IFAPDNIVAKSRFWYFLRQLKKFKK 56 The following BLAST results are available for this feature:
BLAST of CX298472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298472 ID=CX298472; Name=CX298472; organism=Citrus clementina; type=EST; length=701bpback to top |