CX298483

Overview
NameCX298483
Unique NameCX298483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10712 contig Ccv1_Contig10712:608..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT2_DROME (Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 72/185 (38.92%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   10 EVDHRFKEIKDLKADAVFSIDDDIIF-PCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV----KGKIYEIGSTG-ISTLGGHSEKRTQCLNRFAAEFGRMPLVPTSMKA 546
            ++ +RF    +++ +A+ +IDDDII      + F ++VWR  PD +VGF  R    E+   + +Y         WT   SMVL+ A+F HK +  +YT+ MP  IK++V E+ NCEDIAM+FLVAN+T+ PPI V    K K  E  +T  +S    H  +R+ C++RF+  +GRMPL     +A
Sbjct:  517 KLSNRFYPYPEIETEAILTIDDDIIMLTTDELDFGYEVWREFPDHIVGFPSRIHVWENVTMRWHYES------EWTNQISMVLTGAAFHHKYWSHMYTHAMPGDIKDWVDEHMNCEDIAMNFLVANITNNPPIKVTPRKKFKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRMPLRTVEFRA 695          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1A_DANRE (Exostosin-1a OS=Danio rerio GN=ext1a PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 1
Query:    1 DSAEVDHRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV-KGKIYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            +S  +  RF   +++  DAV S+D+D +     V FAF VW+S P+++VG+  R    +S   K+ + Y   W    T  YSMVL+ A+F+H+ Y  LYT+ +P S+K  V +  NCEDI M+FLV+ VT  PPI V + K Y+    G ++         H  +R  C+N+FA+ FG MPLV + M+
Sbjct:  526 ESKVMSSRFLPYENIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDSN--KERWGYTSKW----TNDYSMVLTGAAFYHRYYNYLYTHYLPGSLKGLVDQLSNCEDILMNFLVSAVTKMPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQTCMNKFASWFGTMPLVHSQMR 707          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1B_DANRE (Exostosin-1b OS=Danio rerio GN=ext1b PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.559e-26
Identity = 70/181 (38.67%), Postives = 106/181 (58.56%), Query Frame = 1
Query:   22 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV-KGKIYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            RF+  + L +DAV S+D+D +     V FAF VW+S P+++VG+  R    ++   K+ + Y   W    T  YSMVL+ A+ +H+ Y  LYT+ +P+S+K  V +  NCEDI M+FLV+ VT  PP+ V + K Y+    G S+         H  +R  C+N+FA+ FG MPLV + M+
Sbjct:  544 RFQPYESLISDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNN--KERWGYTSKW----TNDYSMVLTGAAIYHRYYHFLYTHFLPSSLKSMVDQLANCEDILMNFLVSAVTKLPPVKVTQKKQYKETMMGQSSRASRWADPDHFAQRQTCMNKFASWFGGMPLVHSQMR 718          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1_CRIGR (Exostosin-1 OS=Cricetulus griseus GN=EXT1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.473e-26
Identity = 73/189 (38.62%), Postives = 105/189 (55.56%), Query Frame = 1
Query:    1 DSAEVDHRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVE-SKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV-KGKIYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            +S  +  RF    ++  DAV S+D+D +     V FAF VW+S P+++VG+  R    + SKE   Y S        WT  YSMVL+ A+ +HK Y  LYT+ +P S+K  V +  NCEDI M+FLV+ VT  PPI V + K Y+    G ++         H  +R  C+N FA+ FG MPL+ + M+
Sbjct:  542 ESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSK-------WTNDYSMVLTGAAIYHKYYHYLYTHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGYMPLIHSQMR 723          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1_BOVIN (Exostosin-1 OS=Bos taurus GN=EXT1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.473e-26
Identity = 73/189 (38.62%), Postives = 105/189 (55.56%), Query Frame = 1
Query:    1 DSAEVDHRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVE-SKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV-KGKIYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            +S  +  RF    ++  DAV S+D+D +     V FAF VW+S P+++VG+  R    + SKE   Y S        WT  YSMVL+ A+ +HK Y  LYT+ +P S+K  V +  NCEDI M+FLV+ VT  PPI V + K Y+    G ++         H  +R  C+N FA+ FG MPL+ + M+
Sbjct:  542 ESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSK-------WTNDYSMVLTGAAIYHKYYHYLYTHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGYMPLIHSQMR 723          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1_PONAB (Exostosin-1 OS=Pongo abelii GN=EXT1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 1
Query:    1 DSAEVDHRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVE-SKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWVKGK-IYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            +S  +  RF    ++  DAV S+D+D +     V FAF VWRS P+++VG+  R    + SKE   Y S        WT  YSMVL+ A+ +HK Y  LY++ +P S+K  V +  NCEDI M+FLV+ VT  PPI V  K  Y+    G ++         H  +R  C+N FA+ FG MPL+ + M+
Sbjct:  542 ESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWRSFPERIVGYPARSHFWDNSKERWGYTSK-------WTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKEQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGYMPLIHSQMR 723          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1_PAPAN (Exostosin-1 OS=Papio anubis GN=EXT1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 1
Query:    1 DSAEVDHRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVE-SKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV-KGKIYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            +S  +  RF    ++  DAV S+D+D +     V FAF VW+S P+++VG+  R    + SKE   Y S        WT  YSMVL+ A+ +HK Y  LY++ +P S+K  V +  NCEDI M+FLV+ VT  PPI V + K Y+    G ++         H  +R  C+N FA+ FG MPL+ + M+
Sbjct:  542 ESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSK-------WTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGYMPLIHSQMR 723          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1_MOUSE (Exostosin-1 OS=Mus musculus GN=Ext1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 1
Query:    1 DSAEVDHRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVE-SKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV-KGKIYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            +S  +  RF    ++  DAV S+D+D +     V FAF VW+S P+++VG+  R    + SKE   Y S        WT  YSMVL+ A+ +HK Y  LY++ +P S+K  V +  NCEDI M+FLV+ VT  PPI V + K Y+    G ++         H  +R  C+N FA+ FG MPL+ + M+
Sbjct:  542 ESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSK-------WTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGYMPLIHSQMR 723          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT1_HUMAN (Exostosin-1 OS=Homo sapiens GN=EXT1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 1
Query:    1 DSAEVDHRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVE-SKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV-KGKIYEIGSTGISTLGG------HSEKRTQCLNRFAAEFGRMPLVPTSMK 543
            +S  +  RF    ++  DAV S+D+D +     V FAF VW+S P+++VG+  R    + SKE   Y S        WT  YSMVL+ A+ +HK Y  LY++ +P S+K  V +  NCEDI M+FLV+ VT  PPI V + K Y+    G ++         H  +R  C+N FA+ FG MPL+ + M+
Sbjct:  542 ESKVMSSRFLPYDNIITDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNSKERWGYTSK-------WTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVDQLANCEDILMNFLVSAVTKLPPIKVTQKKQYKETMMGQTSRASRWADPDHFAQRQSCMNTFASWFGYMPLIHSQMR 723          
BLAST of CX298483 vs. ExPASy Swiss-Prot
Match: EXT2_MOUSE (Exostosin-2 OS=Mus musculus GN=Ext2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 1
Query:   10 EVDHRFKEIKDLKADAVFSIDDDIIF-PCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWV----KGKIYEIGS-TGISTLGGHSEKRTQCLNRFAAEFGRMPL 525
            ++ +RF    +++ +AV +IDDDII      ++F ++VWR  PD++VG+  R    + +  K  Y         WT   SMVL+ A+F+HK +  LYT +MP  IK +V  + NCEDIAM+FLVANVT    I V    K K  E  +  G+S    H  +R++C+N+FA+ FG MPL
Sbjct:  518 KLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVGYPGRLHLWDHEMNKWKYES------EWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGTMPL 689          
The following BLAST results are available for this feature:
BLAST of CX298483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
EXT2_DROME3.141e-2738.92Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=... [more]
EXT1A_DANRE6.998e-2738.30Exostosin-1a OS=Danio rerio GN=ext1a PE=2 SV=1[more]
EXT1B_DANRE1.559e-2638.67Exostosin-1b OS=Danio rerio GN=ext1b PE=2 SV=1[more]
EXT1_CRIGR3.473e-2638.62Exostosin-1 OS=Cricetulus griseus GN=EXT1 PE=1 SV=... [more]
EXT1_BOVIN3.473e-2638.62Exostosin-1 OS=Bos taurus GN=EXT1 PE=2 SV=1[more]
EXT1_PONAB5.924e-2638.62Exostosin-1 OS=Pongo abelii GN=EXT1 PE=2 SV=1[more]
EXT1_PAPAN1.011e-2538.10Exostosin-1 OS=Papio anubis GN=EXT1 PE=3 SV=1[more]
EXT1_MOUSE1.011e-2538.10Exostosin-1 OS=Mus musculus GN=Ext1 PE=1 SV=1[more]
EXT1_HUMAN1.011e-2538.10Exostosin-1 OS=Homo sapiens GN=EXT1 PE=1 SV=2[more]
EXT2_MOUSE2.940e-2539.89Exostosin-2 OS=Mus musculus GN=Ext2 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012F10SK RindPdig24 Citrus clementina cDNA clone C06012F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298483 ID=CX298483; Name=CX298483; organism=Citrus clementina; type=EST; length=736bp
GATTCGGCCGAGGTTGACCATAGATTTAAAGAGATTAAGGATTTGAAGGC
GGATGCTGTTTTCTCAATTGATGATGATATCATATTTCCTTGCCATTCGG
TAAAGTTTGCTTTTGATGTTTGGCGAAGTGCACCGGATCAAATGGTGGGC
TTTGTCCCCCGAAAGGTTTGCGTTGAATCGAAAGAAGGTAAGGATTATTA
TTCATATTGTGGGTGGTGGTCTGTTTGGTGGACTGGAACATACAGTATGG
TGCTCTCGAAAGCTTCCTTTTTCCACAAAAAGTATCTGCGTCTATATACA
AATGAGATGCCAACATCGATTAAAGAATTTGTTACCGAGAACAGGAACTG
CGAAGATATTGCGATGTCATTTCTTGTTGCCAATGTGACTGATGCTCCCC
CCATATGGGTGAAAGGTAAAATATATGAGATTGGTTCAACTGGAATTAGT
ACCCTGGGAGGCCATTCCGAAAAAAGAACCCAGTGTCTAAACAGATTTGC
AGCTGAGTTTGGTCGGATGCCCTTAGTACCAACTTCAATGAAAGCTGTTG
ATAGTCGCCGCATGTGGTTTTGGTGATGATGTAGTTTCACTTTCTTTTAC
AAAACGCTAAACTTCCACTTAAATCAGTTGAGTCATTTTGTTTTTTTTTT
TGGCCCTCTGGCTTTAGAGTTGTATAAATTGGTTTGTTTACCTATTTTTG
TATTTTGAGATAGGGGCAATTCTTTTTACATGTCTG
back to top