CX298488

Overview
NameCX298488
Unique NameCX298488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15329 contig Ccv1_Contig15329:142..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.186e-53
Identity = 108/220 (49.09%), Postives = 144/220 (65.45%), Query Frame = 2
Query:   38 EVKLHGAVLPSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPNNPYDRALARFWIKFAEDK--GVAVWKMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQLMAS 691
            +VKL G ++ SPFV RV  ALKLKGV Y+F+ E+L NKS  LLKYNPVHKK+PV VH  +P+ ES+VI+EYI+ETW  NP++P++PY RALARFW KF +DK  G     +F    +E +  ++E  E LQ +E   L +KKFF G+  GLVD+A   I +W+ + ++  G +LF S KFP L+ W + F   P + E LP +D L    K R E L AS
Sbjct:    7 DVKLLG-IVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENE-LKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.846e-53
Identity = 107/220 (48.64%), Postives = 142/220 (64.55%), Query Frame = 2
Query:   32 MAEVKLHGAVLPSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPNNPYDRALARFWIKFAEDKGVAVWKMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQLMAS 691
            MAEVKL G    SPF +RV WALKLKGV YE++ ED  NKS+ LL+ NPVHKK+PVL+H GKP+ ESMVILEYI+ET+    ++P +PYDRALARFW KF  DK  AV   F   G+E +   +E  EML+ ++   L +KKFF GD  G  D+A   + +WL V E+  G  L  S KFP    W + +     ++E+LP++DEL    + R + ++AS
Sbjct:    1 MAEVKLLGFWY-SPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNE-LKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAFFRARFQAVVAS 218          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.780e-52
Identity = 104/220 (47.27%), Postives = 142/220 (64.55%), Query Frame = 2
Query:   32 MAEVKLHGAVLPSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPNNPYDRALARFWIKFAEDKGVAVWKMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQLMAS 691
            MAEVKL G    SPF +RV WALK+KGV YE++ ED  NKS+ LL+ NPV+KK+PVL+H GKP+ ESM+ILEYI+ET+    ++P +PYDRALARFW KF +DK  AV   F   G+E +   +E  EML+ ++   L +KKFF GD  G  D+A   + +WL V E+  G  L +S KFP    W + +     + E+LP +DEL    + R + ++AS
Sbjct:    1 MAEVKLLGFWY-SPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNE-LKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAFFRARFQAVVAS 218          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.780e-52
Identity = 107/220 (48.64%), Postives = 141/220 (64.09%), Query Frame = 2
Query:   32 MAEVKLHGAVLPSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPNNPYDRALARFWIKFAEDKGVAVWKMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQLMAS 691
            MAEVKL G +  SPF +RV WALK+KGV YEF+ EDL NKS  LL+ NP+HKKIPVL+H GK +CESMVILEYI+E +    ++P +PYDRALARFW K+ EDKG AVWK F S G+E +   +EA EML+ ++     +KK F GD  G  D+       +L ++E+  G  L  S KFP   AW + +      EE  P++DEL +  +   + + AS
Sbjct:    1 MAEVKLLG-LRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPSILPKDPYDRALARFWAKYVEDKGAAVWKSFFSKGEEQEKAKEEAYEMLKILDNE-FKDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEY--CTQNEEYFPSRDELLIRYRAYIQPVDAS 216          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 108/221 (48.87%), Postives = 140/221 (63.35%), Query Frame = 2
Query:   32 MAEVKLHGAVLPSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPNNPYDRALARFWIKFAEDKGVAVWKMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQLMASA 694
            MAEVKL G    SPF  RV WALK+KGV YE++ ED  NKS+ LL+ NP+HKK+PVL+H GK + ESMVILEYI+ET+    ++P +PYDRALARFW KF +DK  AV K F   G+E +   +E  EML+ ++   L +KKFF GD  G  D+A   + +WL V E+A G  L  S KFP    W   +     I+E+LP +DEL    + R +   ASA
Sbjct:    1 MAEVKLLGFWY-SPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNE-LKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAFYRSRCQAAAASA 219          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.588e-40
Identity = 84/206 (40.78%), Postives = 131/206 (63.59%), Query Frame = 2
Query:   38 EVKLHGAVLPSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPNNPYDRALARFWIKFAEDK--GVAVWKMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIV-YWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDE 646
            EVKL G +  SPF  RV  ALKLKG+PYE+V E L NKS  LL  NP+HKK+PVLVH GK + ES VILEYI+ETWPQNP++P +PY+R+ ARF+ K  +++   V    M R+  +  +   ++  E++  +E+  +G K +F G  +G +D   GS++ + L+   + +G ++    KFP    W+   ++V ++++ +P ++E
Sbjct:    6 EVKLLG-IWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQNPILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELVG-KDYFGGKTVGFLDFVAGSLIPFCLERGWEGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREE 209          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37
Identity = 91/231 (39.39%), Postives = 133/231 (57.58%), Query Frame = 2
Query:   38 EVKLHGAVLPSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP-----QNPLMPNNPYDRALARFWIKFAEDKGVAVWK--MFRS-TGQELQNTMKEALEMLQTIEEHGLGE----KKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQLMASA 694
            E+KL G V  SP+  RV   L LK +PYE+V E+L +KS  LL  NPVHK +PVL+H G+PV ES VI++YI+E WP     +  +MP++PY+RA+ARFW  + +DK    W   +F S T +E    + +A+  L+T+ E   GE    K FF GD +G VD+  G  + W   I+  +G +L +  + P L AW E F+     +  +P  D+    ++ R+  L  SA
Sbjct:    6 ELKLLG-VWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETL-EGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVP--DDADKLLEFRQTLLRWSA 232          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 79/200 (39.50%), Postives = 117/200 (58.50%), Query Frame = 2
Query:   65 PSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQN-PLMPNNPYDRALARFWIKFAEDK----GVAVWKMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDEL 649
            PS F  R+  AL LKG+ YE   E+LS+KS  LL+ NPVHKKIP+L+H  K +CES+ ILEYI+E W    PL+P++PY+R+ ARFW  + + K    G  VW      G++ +   KE +E+L+T+E   LG K +F GDN+G VD+A      W    E      +    + P+L  W +T  +   + ++LP+  ++
Sbjct:   13 PSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWS---GKGEDQEEAKKEFIEILKTLEGE-LGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSI--EAECPKLVVWAKTCMESESVSKSLPHPHKI 206          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.197e-34
Identity = 79/208 (37.98%), Postives = 120/208 (57.69%), Query Frame = 2
Query:   65 PSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNP--LMPNNPYDRALARFWIKFAEDKGVAVW-KMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQ 679
            PS F  R+  AL  K + YE+  EDL NKS  LL+ NP+HKKIPVL+H GKP+CES++ +EYIEE W      L+P++PYDRA ARFW  + + K      K++ + G+E +   K+ +E L+ + E  LG+K +F G++ G VD+A      W    E           + P+  AW +   Q   + ++LP+Q ++   VK+ R++
Sbjct:   13 PSMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVL-EGALGDKPYFGGESFGFVDIALIGYYSWFYAYE--TFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQK 217          
BLAST of CX298488 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 78/208 (37.50%), Postives = 120/208 (57.69%), Query Frame = 2
Query:   65 PSPFVYRVIWALKLKGVPYEFVAEDLSNKSASLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQN--PLMPNNPYDRALARFWIKFAEDKGVAVW-KMFRSTGQELQNTMKEALEMLQTIEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDAVGAKLFESHKFPRLHAWLETFKQVPVIEENLPNQDELSVAVKLRREQ 679
            PS F  R+  AL  K + YE+  EDL NKS  LL+ NP+HKKIPVL+H GKP+CES++ +EYIEE W      L+P++PYDRA ARFW  + + K      K++ + G+E +   K+ +E L+ + E  LG++ +F G++ G VD+A      W    E           + P+  AW +   Q   + ++LP+Q ++   VK+ R++
Sbjct:   13 PSMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVL-EGALGDRPYFGGESFGFVDIALIGFYSWFYAYE--TFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQK 217          
The following BLAST results are available for this feature:
BLAST of CX298488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GSTX6_SOYBN5.186e-5349.09Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX3_TOBAC8.846e-5348.64Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC9.780e-5247.27Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_SOLTU9.780e-5248.64Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX1_TOBAC1.668e-5148.87Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_ARATH8.588e-4040.78Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTU6_ORYSJ8.887e-3739.39Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTXA_TOBAC1.419e-3439.50Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX4_TOBAC9.197e-3437.98Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC1.569e-3337.50Probable glutathione S-transferase parC OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC06012G03SK RindPdig24 Citrus clementina cDNA clone C06012G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298488 ID=CX298488; Name=CX298488; organism=Citrus clementina; type=EST; length=698bp
ACCTGATATCAAATTCAATCTAAGAATTATCATGGCTGAAGTGAAGCTTC
ATGGGGCAGTACTGCCGAGTCCATTTGTTTACAGGGTGATTTGGGCTCTG
AAATTGAAAGGCGTGCCATATGAATTTGTTGCAGAAGATCTCTCAAACAA
AAGTGCTTCGCTTTTGAAGTACAATCCAGTTCACAAGAAGATCCCAGTGC
TTGTCCATGGCGGAAAACCAGTTTGTGAGTCCATGGTTATTCTCGAATAC
ATCGAAGAGACGTGGCCACAGAATCCCTTGATGCCAAACAATCCTTATGA
TAGAGCTCTTGCTCGATTCTGGATTAAATTCGCCGAAGACAAGGGTGTTG
CTGTTTGGAAAATGTTTCGAAGCACTGGACAAGAACTACAAAACACAATG
AAGGAAGCCTTGGAAATGCTACAAACCATTGAAGAGCATGGCTTGGGAGA
GAAGAAATTTTTCAATGGAGACAATATTGGCTTAGTGGACCTAGCGTTTG
GTTCAATTGTTTATTGGTTGCAAGTCATTGAAGATGCAGTGGGAGCTAAA
CTATTTGAATCACACAAATTCCCTCGCTTGCATGCCTGGCTTGAAACTTT
CAAGCAAGTCCCTGTGATTGAAGAAAATCTTCCTAATCAGGATGAACTAT
CGGTTGCTGTCAAACTTCGTCGTGAACAGTTGATGGCTTCTGCTTGAT
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