CX298493

Overview
NameCX298493
Unique NameCX298493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig754 contig Ccv1_Contig754:1..461. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYVELKESV SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  498 FTGAPGKYVELKESVKSFQGVLDGKYDDLPEQSFYMVGG 536          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYVELKES+ SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  507 FTGAPGKYVELKESITSFQGVLDGKYDDLPEQSFYMVGG 545          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYVELKESV SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  497 FTGAPGKYVELKESVNSFQGVLDGKYDDLPEQSFYMVGG 535          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.471e-14
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYVELKE V SFQGVLDGKYDDLPEQSFYM+GG
Sbjct:  492 FTGAPGKYVELKECVTSFQGVLDGKYDDLPEQSFYMLGG 530          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBM_ACTDE (ATP synthase subunit beta, mitochondrial (Fragment) OS=Actinidia deliciosa GN=ATPB PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.471e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYV+LKES+ SFQGVLDGK+DDLPEQSFYMVGG
Sbjct:  118 FTGAPGKYVDLKESITSFQGVLDGKFDDLPEQSFYMVGG 156          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.715e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYV+LKES+ SFQGVLDGKYDDL EQSFYMVGG
Sbjct:  505 FTGAPGKYVDLKESINSFQGVLDGKYDDLSEQSFYMVGG 543          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYV+LKE++ SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  504 FTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 542          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYV+LKE++ SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  501 FTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 539          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F GAPGKYV+LKE++ SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  501 FTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 539          
BLAST of CX298493 vs. ExPASy Swiss-Prot
Match: ATPB_ARCB4 (ATP synthase subunit beta OS=Arcobacter butzleri (strain RM4018) GN=atpD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.688e-12
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 FPGAPGKYVELKESVASFQGVLDGKYDDLPEQSFYMVGG 118
            F G+PGKYVELK+++A FQG+LDGKYD++PE +FYMVGG
Sbjct:  414 FTGSPGKYVELKDTIAGFQGILDGKYDNIPEMAFYMVGG 452          
The following BLAST results are available for this feature:
BLAST of CX298493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATPBM_MAIZE8.440e-1594.87ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_HEVBR8.440e-1592.31ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_ORYSJ1.102e-1494.87ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_DAUCA5.471e-1489.74ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBM_ACTDE5.471e-1487.18ATP synthase subunit beta, mitochondrial (Fragment... [more]
ATPBM_NICPL2.715e-1387.18ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBO_ARATH1.348e-1282.05ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBN_ARATH1.348e-1282.05ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH1.348e-1282.05ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPB_ARCB46.688e-1271.79ATP synthase subunit beta OS=Arcobacter butzleri (... [more]

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Properties
Property NameValue
Genbank descriptionC06012G08SK RindPdig24 Citrus clementina cDNA clone C06012G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298493 ID=CX298493; Name=CX298493; organism=Citrus clementina; type=EST; length=460bp
TTTTCCGGGTGCCCCTGGCAAGTATGTGGAGTTGAAGGAGAGCGTTGCCA
GTTTCCAGGGAGTGTTGGATGGAAAATATGATGACCTTCCAGAACAGTCA
TTTTACATGGTTGGAGGCATCGAGGAGGTCATTGCCAAGGCCGAGAAGAT
TGCCAAGGAATTAGCTGCCTAATCAAATCTCATGCTGGTCTCTTCCCATT
CCTTTTCAATGCTTTTAGCTTGATTACTGCGAAAATCAATAATTTAGGTG
GTGCTGGCCACGCCGGCGTCGGGATGTTCATTTTTTGAGACCAAATGTGC
CAGAAGCTTCTATTTCTGTTTTAATGTTATTGCAAAGTGTGAAATAGGAA
CAGAACTGGGGCCTTTCCTGCTAAAGTCTGCTTTTTTCTTGTTATTTAAT
AAGGGAAAAAAAAGAATGCGGACATGTATATTTCTTTTGCCAAAAAAAAA
AAAAAAAAAA
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