CX298503

Overview
NameCX298503
Unique NameCX298503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298503_ssr176 microsatellite CX298503_ssr176:176..193. BLAST: Citrus ESTs to Prunus persica proteins V1
CX298503_ssr275 microsatellite CX298503_ssr275:275..286. BLAST: Citrus ESTs to Prunus persica proteins V1
CX298503_ssr307 microsatellite CX298503_ssr307:307..318. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig755 contig Ccv1_Contig755:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 127.102 bits (318), Expect = 2.986e-32
Identity = 61/94 (64.89%), Postives = 73/94 (77.66%), Query Frame = 2 
Query:  386 WDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            + L LGELARIWKGGCIIRA FL++IK+AYD +  LANLL+ PEF + I+DRQ AWRRV+ +A   GI  P  S+SL YFDSYRR+RLP NL Q
Sbjct:  353 YGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVIAIAAERGIPVPAFSASLDYFDSYRRDRLPQNLTQ 446

HSP 2 Score: 32.7278 bits (73), Expect = 2.986e-32
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  447 AQRDYFGAHTYER 459
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.567e-30
Identity = 61/99 (61.62%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S E G+D+ L E+ARIWKGGCIIRA FLD+IKKA+  N  L NLL+ PEF + I+DRQ  WR V+ LA   GI+ P  SSSL YFDSYRR  LP NL Q
Sbjct:  356 SQEFGYDVNLPEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLANEMGIAVPAFSSSLDYFDSYRRAVLPQNLTQ 454

HSP 2 Score: 32.7278 bits (73), Expect = 1.567e-30
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  455 AQRDYFGAHTYER 467
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.723e-29
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLGELA IW+ GCIIRA FL +IK AYD N +L NLL+DP F   +++ Q A R VV  ++ +G+ TPG S+S+ Y+DSYR E LPANL+Q
Sbjct:  343 SEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSVYNGVPTPGFSASINYYDSYRSEDLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 3.723e-29
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.723e-29
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLGELA IW+ GCIIRA FL +IK AYD N +L NLL+DP F   +++ Q A R VV  ++ +G+ TPG S+S+ Y+DSYR E LPANL+Q
Sbjct:  343 SEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSVYNGVPTPGFSASINYYDSYRSEDLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 3.723e-29
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAW (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MW2) GN=gnd PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.208e-28
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F   + + Q A R VV   + +G+ TPG SSS+ Y+DSYR   LPANL+Q
Sbjct:  343 SEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 5.208e-28
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAS (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MSSA476) GN=gnd PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.208e-28
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F   + + Q A R VV   + +G+ TPG SSS+ Y+DSYR   LPANL+Q
Sbjct:  343 SEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 5.208e-28
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAR (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MRSA252) GN=gnd PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.208e-28
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F   + + Q A R VV   + +G+ TPG SSS+ Y+DSYR   LPANL+Q
Sbjct:  343 SEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 5.208e-28
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain N315) GN=gnd PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.208e-28
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F   + + Q A R VV   + +G+ TPG SSS+ Y+DSYR   LPANL+Q
Sbjct:  343 SEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 5.208e-28
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAM (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gnd PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.208e-28
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F   + + Q A R VV   + +G+ TPG SSS+ Y+DSYR   LPANL+Q
Sbjct:  343 SEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 5.208e-28
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
[Close]
BLAST of CX298503 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain COL) GN=gnd PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.208e-28
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:  371 SIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQ 667
            S +  W+LKLG+LA IW+ GCIIRA FL +IK AYD N  L NLL+DP F   + + Q A R VV   + +G+ TPG SSS+ Y+DSYR   LPANL+Q
Sbjct:  343 SEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441

HSP 2 Score: 32.7278 bits (73), Expect = 5.208e-28
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  667 AQRDYFGAHTYER 705
            AQRDYFGAHTYER
Sbjct:  442 AQRDYFGAHTYER 454
The following BLAST results are available for this feature:
BLAST of CX298503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_SYNE72.986e-3264.896-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY31.567e-3061.626-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES3.723e-2955.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ3.723e-2955.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAW5.208e-2854.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAS5.208e-2854.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAR5.208e-2854.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAN5.208e-2854.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAM5.208e-2854.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAC5.208e-2854.556-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC06012H07SK RindPdig24 Citrus clementina cDNA clone C06012H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298503 ID=CX298503; Name=CX298503; organism=Citrus clementina; type=EST; length=708bp
TTTTTTTTTTTTTTTTTTATCATATAATTGATAATGGAAATTCACATTGA
CAAAAGGCAAATTACACACTGACTGGGCAGAATAAAAAACAGTCTCTCTC
AAAAGCAATAATTTAAACACTAACACCACCTTAAGGAGACACCCCAAAAA
TAAAGCAGCAAGCTCTTACTGTGACCACACACACACACACACACCAAACT
TTTATTATAGAATAAATCTAAAATGATGGATGATGGATGCGTCACATAAA
AGTTAATTAATTTAATCGCTGTCACTGCTGCTGCTGCTCTCGTGTCCGTC
CTCGTGCTTCTTCTTCTTCTCCTTCTTTTTCTTCTTCTCTTCACCCTCGT
GCCGAATTCGGCACGAGGAGAGTATTGAAAAAGGATGGGACTTGAAGTTG
GGGGAACTGGCTAGGATTTGGAAGGGGGGTTGCATTATCCGTGCTGTGTT
CCTTGACAGAATCAAGAAGGCATACGATAGGAATGCTGATCTGGCAAACC
TTCTTGTGGACCCTGAGTTTGCAAAGGAAATTGTTGATAGGCAGTCTGCC
TGGCGAAGAGTTGTTTGCCTTGCTATCAACTCGGGTATTAGCACACCTGG
TATGTCATCCAGTCTTGCTTATTTCGACTCATACAGAAGGGAAAGGTTGC
CAGCTAATTTGGTCCAGCTCAACGAGATTATTTTGGTGCTCATACATATG
AAAGGATG
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